PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0213s0023.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 435aa    MW: 47860.8 Da    PI: 8.997
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0213s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.2e-11173215246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rW te+ el+++a +q+G++ +++I + ++ gRt+ q+k ++ +
  Sphfalx0213s0023.1.p 173 ERWRTEDTELFYKALEQFGTD-FELIQQLFP-GRTRRQVKAKFKN 215
                           69*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159633.5E-27165247No hitNo description
PROSITE profilePS512939.801170221IPR017884SANT domain
SMARTSM007177.1E-9171219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-6172215IPR009057Homeodomain-like
SuperFamilySSF466892.54E-10173219IPR009057Homeodomain-like
CDDcd001676.08E-8174215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MGSLDAGAIQ DDQDKVEKTK KKRKLIHGSG PRKRRAEEEN PKKLKKSLKE VESQLPEPAQ  60
MTMRDIIRRA EAIERKKMKE DAAKKAVNGS GTAPVPNVQG RKGSGLPVSE EASVSSVMTP  120
QVQIVDGRIV INQESLVIGA QASTRVDTET YRRVEENASK LNYHSYSNRG PSERWRTEDT  180
ELFYKALEQF GTDFELIQQL FPGRTRRQVK AKFKNEEKLH AVRLADALAH KAQDQSHHYR  240
AIIDMLKPEG GAERDDDELL ANFEPPSKAG QEAVADENGG AGEPVTKVKA GTPSKVIDND  300
VSSLLTEVLV TEKAEAESEV KEKAEADSEA KEKAEAKSEV KDKNKAEEQA KTVPDKSPPP  360
RQSEVEPVLI VVSQKDATIA SQPVETVSIN PQKEAPSAPV PSRNPLLAYS KSTQSSNPLL  420
RYTAKRTPLS SYQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cnb_S8e-18126231369476Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S8e-18126231369476Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S8e-18126231369476Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S8e-18126231369476Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6eu0_V9e-18126231369476Transcription factor TFIIIB component B''
6f40_W9e-18126231369476Transcription factor TFIIIB component B''
6f41_W9e-18126231369476Transcription factor TFIIIB component B''
6f42_W9e-18126231369476Transcription factor TFIIIB component B''
6f44_W9e-18126231369476Transcription factor TFIIIB component B''
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924KKKRKL
22034KKRKLIHGSGPRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.22e-20MYB_related family protein