PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0213s0018.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 850aa MW: 88441.1 Da PI: 6.3357

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0213s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	7.8e-39	229	287	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ek+++cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnvPvG+grrknk++ Sphfalx0213s0018.1.p 229 EKIMACPRCDSLDTKFCYYNNYNINQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKQN 287 7889****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	226	285	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.0E-32	230	286	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	232	286	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	234	270	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MSKALQWMTT KMEEQQVVAK AAAAVAAGDA SSSARAISKM DPAAATGFKL FGKTIAVAAT 60 TAAACVLSDA GADAGALFGM RVAAHWATAA PSCSQKNGIA MGGEEEDEQN LDELRSSSGS 120 NSGVVDDDST ILAVLNNNKS TTTTMCGSGL LHGLQSGAEP CTDLAGLILD HQGDVCVSDS 180 TGLILEDQGV VTQKTITTNI AVQEEEEEEE AEEEEDDDKL VLCSSKPAEK IMACPRCDSL 240 DTKFCYYNNY NINQPRHFCK NCQRYWTAGG TLRNVPVGAG RRKNKQNGGG IHGPPSLLQS 300 SIEGETVMEP SAAAHAHAHA AHAHHRVCQD SSSVLLQQIE LSDGTQEQTS SSHCCRSASP 360 LKISQPKQQQ QQHHPRGLMQ QLENSSSQLL LSPGGSTDSC ITINNNHQSS PFSLSMSVGG 420 GSAEAVASLH PFAAATSMMQ SMDSPTRLGQ KQIIKAPPPQ PSSSSLAAAA NGSAAFGASW 480 ILSNENETGG YPSKDVDVRG NSNSTLTEPL PMQHTSTSFT GPLLPMHMST SFTGPPPMHM 540 VVKDGHVFQH LHSSAVYHHQ QQQSMMLPTS MGDLGAGWTS NGTPFSFFNG TWPPPYGHNN 600 NGWNNGGAAG PVPSSTTMFG SATTMATTAG TGSLGYYAPS AQKFAPWCPA PPGTTATTLQ 660 AAGGHAHWAL AAAAAAAAPG ILGTHGASSG VVLSDMKGAL DHHVSDDNAA AAAFKACGAT 720 TSVSGTSAGV VPWSAQGWRL KTSSGPIGGG IGGGKRASPE GGKVEDMWGS SKLMRVVDYN 780 NNNCNTWNNN TVGIKSNPDV INNNTGNLFK AFQPRMEIQA GAGAGSSKRF YNPTQMFVNS 840 LQFQETTTT*

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MSKALQWMTT KMEEQQVVAK AAAAVAAGDA SSSARAISKM DPAAATGFKL FGKTIAVAAT  60
TAAACVLSDA GADAGALFGM RVAAHWATAA PSCSQKNGIA MGGEEEDEQN LDELRSSSGS  120
NSGVVDDDST ILAVLNNNKS TTTTMCGSGL LHGLQSGAEP CTDLAGLILD HQGDVCVSDS  180
TGLILEDQGV VTQKTITTNI AVQEEEEEEE AEEEEDDDKL VLCSSKPAEK IMACPRCDSL  240
DTKFCYYNNY NINQPRHFCK NCQRYWTAGG TLRNVPVGAG RRKNKQNGGG IHGPPSLLQS  300
SIEGETVMEP SAAAHAHAHA AHAHHRVCQD SSSVLLQQIE LSDGTQEQTS SSHCCRSASP  360
LKISQPKQQQ QQHHPRGLMQ QLENSSSQLL LSPGGSTDSC ITINNNHQSS PFSLSMSVGG  420
GSAEAVASLH PFAAATSMMQ SMDSPTRLGQ KQIIKAPPPQ PSSSSLAAAA NGSAAFGASW  480
ILSNENETGG YPSKDVDVRG NSNSTLTEPL PMQHTSTSFT GPLLPMHMST SFTGPPPMHM  540
VVKDGHVFQH LHSSAVYHHQ QQQSMMLPTS MGDLGAGWTS NGTPFSFFNG TWPPPYGHNN  600
NGWNNGGAAG PVPSSTTMFG SATTMATTAG TGSLGYYAPS AQKFAPWCPA PPGTTATTLQ  660
AAGGHAHWAL AAAAAAAAPG ILGTHGASSG VVLSDMKGAL DHHVSDDNAA AAAFKACGAT  720
TSVSGTSAGV VPWSAQGWRL KTSSGPIGGG IGGGKRASPE GGKVEDMWGS SKLMRVVDYN  780
NNNCNTWNNN TVGIKSNPDV INNNTGNLFK AFQPRMEIQA GAGAGSSKRF YNPTQMFVNS  840
LQFQETTTT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	3e-32	Dof family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0213s0018.1.p