PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0208s0013.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 339aa    MW: 36479.2 Da    PI: 9.6525
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0208s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12555146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                          +++WT+eE+  l  +v+++G+g W++I +        + R+  ++k++w++
  Sphfalx0208s0013.1.p  5 KQKWTPEEEAALRAGVEKYGPGKWRAIQKDSKfgpclTSRSNVDLKDKWRN 55
                          79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.198161IPR017930Myb domain
SuperFamilySSF466891.94E-16258IPR009057Homeodomain-like
SMARTSM007171.1E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-15556IPR009057Homeodomain-like
PfamPF002492.9E-10555IPR001005SANT/Myb domain
CDDcd116602.46E-21656No hitNo description
SMARTSM005262.1E-17114179IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150427.074116184IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.9E-16117187IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.05E-16117186IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd000731.64E-12118189No hitNo description
PfamPF005381.2E-11118177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALRAGV EKYGPGKWRA IQKDSKFGPC LTSRSNVDLK DKWRNMSVSS  60
NGLGSSRERG KPLALMPPPG MLTLMDDALA IDPLATMAPA DVKGDGADIS SDRKSLGPRY  120
DDMVLEAVLG LKEPYGSSNA SIANYIEERH PVPSNFRRLL TTKLKSLALS GKLVKVRQNY  180
KINEGKESPL VAEVAEEREQ SSRGSDAKQP KGNRHGRPEG QSDDANKIRT PRFPRDPRDP  240
SRRFRGDMVP QKKPKTDIEH IARARAKTAE EAARAASIAV AEAEAAAAAA EQATWDAEAA  300
EAEAEALEAA AEAAMAAIRP PKKSLRAVAI AQEVAVDG*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats 5'-TTTAGGG-3', but can also bind to the single G-rich and C-rich telomeric strand. {ECO:0000269|PubMed:14576282}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371594.11e-128telomere repeat-binding factor 1-like
SwissprotQ6WS852e-47SMH1_MAIZE; Single myb histone 1
TrEMBLA0A2K1KSX91e-127A0A2K1KSX9_PHYPA; Uncharacterized protein
STRINGPP1S1_349V6.11e-127(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-35telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]