PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0202s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | G2-like | ||||||||
Protein Properties | Length: 625aa MW: 67081.3 Da PI: 9.2847 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.6 | 8.7e-31 | 346 | 399 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rW++ LH++Fv+ave LGG+ekAtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Sphfalx0202s0008.1.p 346 PRMRWNSRLHQHFVHAVELLGGHEKATPKSVLELMNVKDLTLAHVKSHLQMYRT 399 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-14 | 343 | 399 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-27 | 344 | 399 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-23 | 346 | 399 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.5E-6 | 347 | 398 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MQESSSFNKF PNASRIRSSS QAANTPVAGP DLSLQISPPN SYNQQQQPSS SPGALFVAPR 60 SPHERVHGFD LWKLVPQRSG SCSDSDSNLS SSPAAAAASG RRRHAAAAVG RGGGHEAAAV 120 LGTSTDLCLA NPASFDSFQD RGLPPHKLLQ QAAAGSEAAA FKSVTSGSYH HMQSSPPRGF 180 LQDLHIRVES DRSPLRLQQQ QQVAYPHPHS PHNSPSPPAS SSLHTISPGE VAPRDHSSAY 240 RLGLPASFPS NYIFSSSRDS ESPTLLHQQQ QQQEHNAPPL HAVPTRSADG QYASALNIGG 300 AGGLQSGPRM PNCMTTPSSN LQETSSSTLR SRFMSKLPSK RSMRAPRMRW NSRLHQHFVH 360 AVELLGGHEK ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KTTDKPLSMQ GQNDLSESPH 420 NSRRSSDEFL VAQGSSSNSG VETTTAAPFI PESSNYYPTL GDARAALLSM QNKKPLQESS 480 SLWTGSDSLD WTPGDVGKSR TRPLNGGGLD GSGGSQARHT PAFRGEMNEG LDFATDREQL 540 KSTHPTGQDN AIEGQWMASA SPGNKQPRLQ FNPFALSEFV SSHITNIIPK MPNLEFTLGR 600 SGWNAAGPDH VATDAPQELL LLKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-15 | 347 | 401 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-15 | 347 | 401 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-15 | 347 | 401 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-15 | 347 | 401 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-15 | 347 | 401 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-15 | 347 | 401 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-15 | 347 | 401 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-15 | 347 | 401 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-15 | 347 | 401 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-15 | 347 | 401 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-15 | 347 | 401 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-15 | 347 | 401 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 3e-41 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0202s0008.1.p |