PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0201s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Trihelix | ||||||||
Protein Properties | Length: 394aa MW: 44225.8 Da PI: 5.3657 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 37.7 | 5.4e-12 | 108 | 182 | 1 | 70 |
trihelix 1 rWtkqevlaLiearr....emeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 rW+++e+l+Li+a+ + ++++rg l+ + +W ++++++ g++rs+ q k++w++l+ y ike++++ Sphfalx0201s0005.1.p 108 RWSESETLTLIAAKHaeaqKHPNSIKRGGLNfQRKWVIMAERCKALGMQRSAHQLKKRWNSLHSNYVHIKEWQSQ 182 8*************96554555556677666699**************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.237 | 101 | 170 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-4 | 103 | 170 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.5E-11 | 107 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MEPPEKADAT PEDVKPKDLN VEDTSGGGFE NIQDDDPKVD GRKLDDDVKL EADMKIEDTK 60 FDDAKMDDES DDSPIEMEDT PIGEEGTDEI IRERLQEQNG VKRVRNTRWS ESETLTLIAA 120 KHAEAQKHPN SIKRGGLNFQ RKWVIMAERC KALGMQRSAH QLKKRWNSLH SNYVHIKEWQ 180 SQPGAPDFWS MDRKERMIHK LPAYFHDVIY KALEQPSSIV LPLRPITSSS NLGGTSGGED 240 TLDSSEDNDR STYPVVTFPA SSSQPPPLPP LPPVYSRTLP LPQLQEPPHF ASLSRPPRAP 300 GPAPLVSNGR AHTQCPDLKD VWLETFLHGF SVDPKVIKAL QKEEVTVKVL VDEGTEEGVY 360 KLLKMVAEAT GVKITVGQRA RIWHAVRQWR DNI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 3e-14 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0201s0005.1.p |