PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0200s0019.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 335aa    MW: 37570.5 Da    PI: 10.4857
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0200s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.6e-08276329347
                           SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                           +WT+ E + l+++v+++  +      Wk I +        gRt+ ++k++w+++
  Sphfalx0200s0019.1.p 276 PWTKTEKDVLKEGVQKFSHDdhlayPWKEILEFGVgrfqPGRTAVDLKDKWRNL 329
                           8******************************97557999*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.23E-10271330IPR009057Homeodomain-like
CDDcd116604.89E-11275331No hitNo description
Gene3DG3DSA:1.10.10.606.8E-10276330IPR009057Homeodomain-like
PROSITE profilePS500907.015276330IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSLSLSSMTT GLKQAVTAAR AKLEAFRKVS SYKHHHYKKG LSDQYETGRG SKHSKITGHH  60
SAAVKNNNEI EGRALMTMRH SQDLLNILKA RKDLLRQNLA SAELALFASK PSKLDKWRTS  120
YNIADSSSEE TSNQNSRQED EVEVGFREIS AAAMDIRRNL DFLAYGFNPV FQAFEEVCDV  180
GKGGLMYDKS TASNVIQRAN SGKEVGSSAD ERRPRVETKI LRRTAVNCKE ERRSARPVHG  240
EPTGDRKSGM QSGVATERRC SRGLHKIPGL RRKVVPWTKT EKDVLKEGVQ KFSHDDHLAY  300
PWKEILEFGV GRFQPGRTAV DLKDKWRNLQ KGIS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.24e-06TRF-like 3