PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0199s0019.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 310aa    MW: 34175.6 Da    PI: 7.1749
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0199s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.59e-312078159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                          +dD y+WrKYGqK vk+s++pr+YY+C++++Cpv+k+ver+a+dp +v +tYeg+H+h+
  Sphfalx0199s0019.1.p 20 MDDDYKWRKYGQKAVKSSPYPRNYYKCSTHNCPVRKRVERCADDPGLVLTTYEGTHTHQ 78
                          58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-32580IPR003657WRKY domain
SuperFamilySSF1182908.24E-291380IPR003657WRKY domain
PROSITE profilePS5081130.3661580IPR003657WRKY domain
SMARTSM007741.2E-342079IPR003657WRKY domain
PfamPF031063.5E-242178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKRVKQPKHC IKTRTDVDIM DDDYKWRKYG QKAVKSSPYP RNYYKCSTHN CPVRKRVERC  60
ADDPGLVLTT YEGTHTHQSP LLCRLPFGAY IGGFSHLSYM QPLLISPTGF NPPNLTTSNL  120
PLFGERLEST NTCNINSVGS LSRPMLLSQY SEACSNTCNS IATLGLIAPS YSTAYPLPGS  180
PQFGGDALVD PITLPSTQLS NQNQQLAEDA TIPNAQVEGP FLRMAPVRFA QAGTLQQSNN  240
NYNKFVEAQL QSTTTIGQGL VDSGEDHHGL MRLPASLWSE EVRANHISWT DEGLLEDMVR  300
PSIPTFGFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-261180877Probable WRKY transcription factor 4
2lex_A6e-261180877Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-31WRKY DNA-binding protein 57