PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0197s0030.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 354aa    MW: 38474.1 Da    PI: 6.5071
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0197s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-18207261256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Lee F+ +++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sphfalx0197s0030.1.p 207 RKKLRLSKEQSALLEESFKDHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTK 261
                           778899***********************************************98 PP
2HD-ZIP_I/II125.32.8e-40207296191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq++lLEesF+ +++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL+ke +eLr 
  Sphfalx0197s0030.1.p 207 RKKLRLSKEQSALLEESFKDHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENKRLQKELQELR- 294
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           ++
  Sphfalx0197s0030.1.p 295 AI 296
                           44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-18188261IPR009057Homeodomain-like
SuperFamilySSF466897.27E-18195264IPR009057Homeodomain-like
PROSITE profilePS5007117.329203263IPR001356Homeobox domain
SMARTSM003891.3E-15205267IPR001356Homeobox domain
PfamPF000462.4E-15207261IPR001356Homeobox domain
CDDcd000861.88E-15207264No hitNo description
PROSITE patternPS000270238261IPR017970Homeobox, conserved site
PfamPF021831.5E-10263296IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.4E-24263306IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MLLAEEREMF KQDWRTMKEM TADTGAASLG LSVVDLGVLL QTRYENSSSA AAASSPRQCP  60
VQLDLLPLRP CSHAASCTPA PSSTNDTFSW QPLRNRCTTN SGGSDGYDDD GEVEMYSSGG  120
KGGGGHGGAS SSPRGGIIID MNQLPSTTEC DEVVLSSSPS STGVKLPESN KKFYEFDLEE  180
RERACDLSSR GGGGSDDEDG GGTNATRKKL RLSKEQSALL EESFKDHSTL NPKQKNALAK  240
QLNLRPRQVE VWFQNRRART KLKQTEVDCE LLKRCCETLT EENKRLQKEL QELRAIKVAA  300
PHVIAHDFYM PLPAATLTMC PSCERVATVD NRSVTTFAKK PGYSHFAPSP AAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124GGKGGGG
2205211TRKKLRL
3255263RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379716.11e-121homeobox-leucine zipper protein HAT4-like
SwissprotQ67UE21e-65HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A2R6WPH01e-124A0A2R6WPH0_MARPO; Uncharacterized protein
STRINGPP1S42_217V6.11e-120(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-64homeobox from Arabidopsis thaliana