PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0197s0013.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 363aa    MW: 40068.6 Da    PI: 10.2168
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0197s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993.1e-31292349359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver  edp+++++tYegeHnh 
  Sphfalx0197s0013.1.p 292 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERFLEDPSMLIVTYEGEHNHA 349
                           99***********************9988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-16246288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.2E-33278349IPR003657WRKY domain
PROSITE profilePS5081130.653285351IPR003657WRKY domain
SuperFamilySSF1182903.01E-27286350IPR003657WRKY domain
SMARTSM007742.2E-37290350IPR003657WRKY domain
PfamPF031067.0E-27292348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEVLVDRYQP IQEAAKTGID NARKLLEILR LQPQVLLDEQ QQDAVAGMAI SKLQKVVSLL  60
SRTGHARFRK SPQSPFLARY ASDFPEGNGS CKGGSSGNEV KKLISLDVYL PLQSSVSSTV  120
ADLGAGGHGD GKTLHQALLQ QSVDDQLQRH QQLPQHQQQL LQKQLQIQHQ MQQQLHWQAQ  180
QQLQGMPGVM QSLASLNNSL SSGPPLSTSS KPYSVVSMDG SRCTDKQEHS SLLPSHRQRL  240
QLSGSRKCSG KADGVKCSAL GRCHCSKRRK LRVKRTIRVP AISSKQADIP PDDYSWRKYG  300
QKPIKGSPHP RGYYKCSSMR GCPARKHVER FLEDPSMLIV TYEGEHNHAL STSANTRPLA  360
TC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-202833501076Probable WRKY transcription factor 4
2lex_A1e-202833501076Probable WRKY transcription factor 4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-57WRKY DNA-binding protein 21