PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0196s0022.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 1114aa    MW: 117612 Da    PI: 7.9045
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0196s0022.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA22.41.7e-073063332
                  GATA  3 nCgttkTplWRrgp...dgnkt.LCnaCGlyyrk 32
                           Cgt+++++WR g+    g++  LC +CGl y  
  Sphfalx0196s0022.3.p 30 KCGTSSSTNWRPGWllrAGHTAdLCDSCGLAYEQ 63
                          7**************99999989*******9965 PP
2B354.12.9e-17417517199
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+k l+ sd+++ grlvlpk +ae++   + ++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ 
  Sphfalx0196s0022.3.p 417 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLKIQDVTGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMRLQAGDTVTFSRL 504
                           89**************************555556678***************9989999999***9.********************76 PP

                           SSSEE..EEEEE-S CS
                    B3  86 grsefelvvkvfrk 99 
                           +  +++lv++ +r+
  Sphfalx0196s0022.3.p 505 E-ADGKLVMGYRRA 517
                           5.677778877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.104.2E-52363IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF1019363.92E-19414516IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-28414517IPR015300DNA-binding pseudobarrel domain
CDDcd100173.45E-22415516No hitNo description
SMARTSM010191.5E-19417517IPR003340B3 DNA binding domain
PfamPF023621.1E-14417517IPR003340B3 DNA binding domain
PROSITE profilePS5086311.124417518IPR003340B3 DNA binding domain
PROSITE profilePS5105013.455656706IPR011124Zinc finger, CW-type
PfamPF074961.2E-9661703IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MRDAGLGLEV VQGGVQESAA VRTKVCWNVK CGTSSSTNWR PGWLLRAGHT ADLCDSCGLA  60
YEQSRFCETF HSDDAGWRTC NSCKKRVHCG CIASVYGLVL LDKGGVECSG CVREDDVIAS  120
STSLAGKKHG QQQLLATALG HAANGKEVAD PALRGWGEGG GYGAAALVAC QSEPWQPPSS  180
SAAACEPHAN NARGQQLAAP WDPDLKIEQQ LMESSRSLRP AAKFQDQEMG FPSNLELHAN  240
NLDSSMKSVA AACSPKETRE TAATGGGGKG PPESPPGHVE SSSPSSKSGT DQMPTGLTLS  300
GGSSPVKQVT GEGGQQGGGS ETGAAGESAG HGKASTTVGS YRPPRVRQLL PRPTIAGAAA  360
AVTLEPAFDP QAPLRVARPP GEGRGRNQLL PRYWPRITDQ ELQQITSGDN TVITPLFEKM  420
LSASDAGRIG RLVLPKACAE AYFPPIHQPE GLPLKIQDVT GKEWVFQFRF WPNNNSRMYV  480
LEGVTPCIQS MRLQAGDTVT FSRLEADGKL VMGYRRAPSS LSSQDATGIA TTPPSNNGLP  540
CASYAAPQSL DGWASSKGGA SAKLKDSSAL TLAAAAAATQ QMDRKRGRPL GSKSKRLRLD  600
TDDALLLKSS WEEAQELLRP PPSAVPTTIT IDGHEFEEYS EPPVFAKKTY PNITPSGEHE  660
QWAQCDDCSN WRRLPATAFV PLRWSCSQNT WDLTRAQCNA PQEVSNEKLE MILRQVSGQE  720
DGKQGGGSGS GSGSMRMMLV PTVAGDIITT TAAAAAAAAA GLDTLAQAAA ATTGPVSPMR  780
TTKHPRHRPG CSCIVCIQPP SGKGPKHKAT CTCNVCVTVK RRFKTMMQRR KKRQFERESE  840
LARKKRGWAR DDISDSASLL DAASRPETSA GGGGGGAVAE ENPTTPLVYQ SDDVGGGADE  900
GGPSKAAATA AAIDLNSQPD RDERVSMVRL VQDAGKPLST YLHQQHLMTL CAPDHPLSDK  960
VSEEEDPNSS SSREEVASQT SSKAHADSGM QLVAAAAVTP MQQGQQQQPQ SPFMVDIAEL  1020
SSHMESWDPR AVKPVAEPSG DSVHSSSSKQ EYNMLNQLVV SNAPASSKKY ATGAGRGRQI  1080
CSGCGEPIGS AAKVCRRCGT STAFGKKKRS VPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-623955172124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1819831KRRFKTMMQRRKK
2819832KRRFKTMMQRRKKR
3830845KKRQFERESELARKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380835.10.0B3 domain-containing protein Os07g0679700-like isoform X1
RefseqXP_024380837.10.0B3 domain-containing protein Os07g0679700-like isoform X3
SwissprotQ6Z3U31e-168Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2K1JVP00.0A0A2K1JVP0_PHYPA; Uncharacterized protein
STRINGPP1S42_132V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-142high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]