PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0196s0022.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 1115aa    MW: 117699 Da    PI: 7.9045
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0196s0022.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA22.41.7e-073063332
                  GATA  3 nCgttkTplWRrgp...dgnkt.LCnaCGlyyrk 32
                           Cgt+++++WR g+    g++  LC +CGl y  
  Sphfalx0196s0022.2.p 30 KCGTSSSTNWRPGWllrAGHTAdLCDSCGLAYEQ 63
                          7**************99999989*******9965 PP
2B354.12.9e-17418518199
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+k l+ sd+++ grlvlpk +ae++   + ++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ 
  Sphfalx0196s0022.2.p 418 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLKIQDVTGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMRLQAGDTVTFSRL 505
                           89**************************555556678***************9989999999***9.********************76 PP

                           SSSEE..EEEEE-S CS
                    B3  86 grsefelvvkvfrk 99 
                           +  +++lv++ +r+
  Sphfalx0196s0022.2.p 506 E-ADGKLVMGYRRA 518
                           5.677778877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.104.2E-52363IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF1019363.92E-19415517IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-28415518IPR015300DNA-binding pseudobarrel domain
CDDcd100173.45E-22416517No hitNo description
PROSITE profilePS5086311.124418519IPR003340B3 DNA binding domain
SMARTSM010191.5E-19418518IPR003340B3 DNA binding domain
PfamPF023621.1E-14418518IPR003340B3 DNA binding domain
PROSITE profilePS5105013.455657707IPR011124Zinc finger, CW-type
PfamPF074961.2E-9662704IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1115 aa     Download sequence    Send to blast
MRDAGLGLEV VQGGVQESAA VRTKVCWNVK CGTSSSTNWR PGWLLRAGHT ADLCDSCGLA  60
YEQSRFCETF HSDDAGWRTC NSCKKRVHCG CIASVYGLVL LDKGGVECSG CVREDDVIAS  120
STSLAGKKHG QQQLLATALG HAANGKEVAD PALRGWGEGG GYGAAALVAC QSEPWQPPSS  180
SAAACEPHAN NARGQQLAAP WDPDLKIEQQ LMESSRSLRP AAKFQDQEMG FPSNLELHAN  240
NLDSSMKSVA AACSPKETRE TAATGGGGKG PPESPPGHVE SSSPSSKSGT DQMPTGLTLS  300
GGSSPVKQVT GEGGQQGGGS ETGAAGESAG HGKASTTVGS YRPPRVRQLL PRPTIAGAAA  360
AVTLEPAFDP QAPLRVARPP GEGRGRNQLL PRYWPRITDQ ELQQITSGDS NTVITPLFEK  420
MLSASDAGRI GRLVLPKACA EAYFPPIHQP EGLPLKIQDV TGKEWVFQFR FWPNNNSRMY  480
VLEGVTPCIQ SMRLQAGDTV TFSRLEADGK LVMGYRRAPS SLSSQDATGI ATTPPSNNGL  540
PCASYAAPQS LDGWASSKGG ASAKLKDSSA LTLAAAAAAT QQMDRKRGRP LGSKSKRLRL  600
DTDDALLLKS SWEEAQELLR PPPSAVPTTI TIDGHEFEEY SEPPVFAKKT YPNITPSGEH  660
EQWAQCDDCS NWRRLPATAF VPLRWSCSQN TWDLTRAQCN APQEVSNEKL EMILRQVSGQ  720
EDGKQGGGSG SGSGSMRMML VPTVAGDIIT TTAAAAAAAA AGLDTLAQAA AATTGPVSPM  780
RTTKHPRHRP GCSCIVCIQP PSGKGPKHKA TCTCNVCVTV KRRFKTMMQR RKKRQFERES  840
ELARKKRGWA RDDISDSASL LDAASRPETS AGGGGGGAVA EENPTTPLVY QSDDVGGGAD  900
EGGPSKAAAT AAAIDLNSQP DRDERVSMVR LVQDAGKPLS TYLHQQHLMT LCAPDHPLSD  960
KVSEEEDPNS SSSREEVASQ TSSKAHADSG MQLVAAAAVT PMQQGQQQQP QSPFMVDIAE  1020
LSSHMESWDP RAVKPVAEPS GDSVHSSSSK QEYNMLNQLV VSNAPASSKK YATGAGRGRQ  1080
ICSGCGEPIG SAAKVCRRCG TSTAFGKKKR SVPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-623955182124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1820832KRRFKTMMQRRKK
2820833KRRFKTMMQRRKKR
3831846KKRQFERESELARKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380835.10.0B3 domain-containing protein Os07g0679700-like isoform X1
RefseqXP_024380837.10.0B3 domain-containing protein Os07g0679700-like isoform X3
SwissprotQ6Z3U31e-169Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2K1JVP00.0A0A2K1JVP0_PHYPA; Uncharacterized protein
STRINGPP1S31_242V6.10.0(Physcomitrella patens)
STRINGPP1S42_132V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-142high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]