PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0196s0022.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 1116aa MW: 117827 Da PI: 7.9045 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 22.4 | 1.7e-07 | 30 | 63 | 3 | 32 |
GATA 3 nCgttkTplWRrgp...dgnkt.LCnaCGlyyrk 32 Cgt+++++WR g+ g++ LC +CGl y Sphfalx0196s0022.1.p 30 KCGTSSSTNWRPGWllrAGHTAdLCDSCGLAYEQ 63 7**************99999989*******9965 PP | |||||||
2 | B3 | 54 | 2.9e-17 | 419 | 519 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k l+ sd+++ grlvlpk +ae++ + ++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ Sphfalx0196s0022.1.p 419 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLKIQDVTGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMRLQAGDTVTFSRL 506 89**************************555556678***************9989999999***9.********************76 PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++lv++ +r+ Sphfalx0196s0022.1.p 507 E-ADGKLVMGYRRA 519 5.677778877775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 4.3E-5 | 23 | 63 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene3D | G3DSA:2.40.330.10 | 4.6E-28 | 416 | 519 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-19 | 416 | 518 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.46E-22 | 417 | 518 | No hit | No description |
Pfam | PF02362 | 1.1E-14 | 419 | 519 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.124 | 419 | 520 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-19 | 419 | 519 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.455 | 658 | 708 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.2E-9 | 663 | 705 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1116 aa Download sequence Send to blast |
MRDAGLGLEV VQGGVQESAA VRTKVCWNVK CGTSSSTNWR PGWLLRAGHT ADLCDSCGLA 60 YEQSRFCETF HSDDAGWRTC NSCKKRVHCG CIASVYGLVL LDKGGVECSG CVREDDVIAS 120 STSLQAGKKH GQQQLLATAL GHAANGKEVA DPALRGWGEG GGYGAAALVA CQSEPWQPPS 180 SSAAACEPHA NNARGQQLAA PWDPDLKIEQ QLMESSRSLR PAAKFQDQEM GFPSNLELHA 240 NNLDSSMKSV AAACSPKETR ETAATGGGGK GPPESPPGHV ESSSPSSKSG TDQMPTGLTL 300 SGGSSPVKQV TGEGGQQGGG SETGAAGESA GHGKASTTVG SYRPPRVRQL LPRPTIAGAA 360 AAVTLEPAFD PQAPLRVARP PGEGRGRNQL LPRYWPRITD QELQQITSGD SNTVITPLFE 420 KMLSASDAGR IGRLVLPKAC AEAYFPPIHQ PEGLPLKIQD VTGKEWVFQF RFWPNNNSRM 480 YVLEGVTPCI QSMRLQAGDT VTFSRLEADG KLVMGYRRAP SSLSSQDATG IATTPPSNNG 540 LPCASYAAPQ SLDGWASSKG GASAKLKDSS ALTLAAAAAA TQQMDRKRGR PLGSKSKRLR 600 LDTDDALLLK SSWEEAQELL RPPPSAVPTT ITIDGHEFEE YSEPPVFAKK TYPNITPSGE 660 HEQWAQCDDC SNWRRLPATA FVPLRWSCSQ NTWDLTRAQC NAPQEVSNEK LEMILRQVSG 720 QEDGKQGGGS GSGSGSMRMM LVPTVAGDII TTTAAAAAAA AAGLDTLAQA AAATTGPVSP 780 MRTTKHPRHR PGCSCIVCIQ PPSGKGPKHK ATCTCNVCVT VKRRFKTMMQ RRKKRQFERE 840 SELARKKRGW ARDDISDSAS LLDAASRPET SAGGGGGGAV AEENPTTPLV YQSDDVGGGA 900 DEGGPSKAAA TAAAIDLNSQ PDRDERVSMV RLVQDAGKPL STYLHQQHLM TLCAPDHPLS 960 DKVSEEEDPN SSSSREEVAS QTSSKAHADS GMQLVAAAAV TPMQQGQQQQ PQSPFMVDIA 1020 ELSSHMESWD PRAVKPVAEP SGDSVHSSSS KQEYNMLNQL VVSNAPASSK KYATGAGRGR 1080 QICSGCGEPI GSAAKVCRRC GTSTAFGKKK RSVPP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-62 | 396 | 519 | 2 | 124 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 821 | 833 | KRRFKTMMQRRKK |
2 | 821 | 834 | KRRFKTMMQRRKKR |
3 | 832 | 847 | KKRQFERESELARKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380835.1 | 0.0 | B3 domain-containing protein Os07g0679700-like isoform X1 | ||||
Refseq | XP_024380837.1 | 0.0 | B3 domain-containing protein Os07g0679700-like isoform X3 | ||||
Swissprot | Q6Z3U3 | 1e-169 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A2K1JVP0 | 0.0 | A0A2K1JVP0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S31_242V6.1 | 0.0 | (Physcomitrella patens) | ||||
STRING | PP1S42_132V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-142 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0196s0022.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|