PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0194s0030.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 608aa    MW: 65702.8 Da    PI: 5.0806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0194s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12365408755
                           HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +Er+RR+++N+++  Lr l+Pk      +K++ a+iL  A+eY+k+Lq
  Sphfalx0194s0030.1.p 365 VAERKRRKKLNERLYSLRALVPKI-----TKMDRASILGDAIEYVKELQ 408
                           68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-2510174IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000836.39E-15355412No hitNo description
PROSITE profilePS5088815.84358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16360418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16365417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-10365408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.45E-6495562No hitNo description
Gene3DG3DSA:3.30.70.2604.5E-4497562No hitNo description
PROSITE profilePS5167110.31498576IPR002912ACT domain
CDDcd048731.05E-8501563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAKHGVGGIQ ERLRSIVGPK GWDYAVFWHL RDDSRSLDWV GCCCSGAEEE ENGATTAPNN  60
LLATSSSSRR YMEAGVCPDV KVLHPPTHIC ALLANMPSSM SLDSGIQGRV FLGGQPKWIH  120
LEPSTVDGQA RSSYEEVPVQ TKVCIPVQSG LVELGVANRG AVTESAPLVQ YVRARCGDPW  180
QAGTSKANIG NDLDSGSGQG MMDQQAVKLY YSHPSPAMSS RHYPLDGSVP WASSHPWDQE  240
GTFLDAHLMG GGSSIPEKSS GASMGNRDHQ SLEGGNIVDP LLRCDTAIEH DLMQQLPGPL  300
VTHSLNHGTG VAMAESPRGS GLSKDDGDVK QEMRGDSSDC SDPMDDDDEK GGPRSARRHL  360
SKNLVAERKR RKKLNERLYS LRALVPKITK MDRASILGDA IEYVKELQQQ VKELQDELLL  420
DGKDEEDGPG GVPSTSIEDQ LAAAGTMGEE GKGGADHEAA RCSAKTDQVI VDALDTKSDE  480
LPQPMQVEVN KMDGRLFSLR IFCEKRPGVF VKLMQALDAL GLDVVHANIT TFRGLVLNVF  540
NAEVIRDKEL MRAEQVRETL LEMTSSNVQP SLLMRPATSC SQIIDSSSDL VPLQHGLALS  600
GHEREGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-143664191265Transcription factor MYC2
5gnj_B5e-143664191265Transcription factor MYC2
5gnj_E5e-143664191265Transcription factor MYC2
5gnj_F5e-143664191265Transcription factor MYC2
5gnj_G5e-143664191265Transcription factor MYC2
5gnj_I5e-143664191265Transcription factor MYC2
5gnj_M5e-143664191265Transcription factor MYC2
5gnj_N5e-143664191265Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366373ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366750.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366751.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366752.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366753.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366754.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366755.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366756.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366757.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366758.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366759.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366760.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366761.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366762.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366763.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366765.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366766.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366767.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366768.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366769.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_024366770.10.0transcription factor ABORTED MICROSPORES-like isoform X1
TrEMBLA9T3F90.0A9T3F9_PHYPA; Predicted protein
STRINGPP1S159_28V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-36bHLH family protein