PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0192s0020.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 198aa    MW: 22454.6 Da    PI: 4.5948
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0192s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.14.9e-1169166398
                           EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                            +l+ s v ks  l lp +f+++     +  +e+   +tl d  s + We  l  +  +++  l+    +F++++ L+egD++vF+l++
  Sphfalx0192s0020.1.p  69 VILKASQVYKSFELDLPLEFVADPnmlqD-LHEKRLSITLVDaISDKPWEAHLWLEMPPKKPRLS--FMDFARSHYLEEGDVCVFELTD 154
                           578899**************977789953.4456678999998899*******556667777677..999******************9 PP

                           SSEE..EEEEE- CS
                    B3  87 rsefelvvkvfr 98 
                           + ef+l v++fr
  Sphfalx0192s0020.1.p 155 NVEFTLSVSLFR 166
                           9********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-962162IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-1263170IPR015300DNA-binding pseudobarrel domain
CDDcd100173.60E-1365166No hitNo description
PROSITE profilePS508638.85467166IPR003340B3 DNA binding domain
SMARTSM010190.003367168IPR003340B3 DNA binding domain
PfamPF023622.6E-868166IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MIAADDGVIR KEIMNPRGGS SSAAATNRKC SYSCVLVSKR GPVTEVERDK ALNAATEFAD  60
NCKNPYYLVI LKASQVYKSF ELDLPLEFVA DPNMLQDLHE KRLSITLVDA ISDKPWEAHL  120
WLEMPPKKPR LSFMDFARSH YLEEGDVCVF ELTDNVEFTL SVSLFRVLEA PFPVDEEAKP  180
DGWREHYEVY ESMMQPN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-13related to vernalization1 1