PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0190s0021.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 696aa    MW: 76026.2 Da    PI: 5.0362
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0190s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30398456159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +dD ++WrKYGqK vk+s++pr+YYrC++++Cpv+k+ver+a+dp +v +tYeg+H+h+
  Sphfalx0190s0021.1.p 398 MDDNFKWRKYGQKAVKNSPYPRNYYRCSTQNCPVRKRVERCADDPGFVLTTYEGTHTHQ 456
                           58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-32383458IPR003657WRKY domain
SuperFamilySSF1182907.85E-29391458IPR003657WRKY domain
PROSITE profilePS5081129.964393458IPR003657WRKY domain
SMARTSM007742.6E-36398457IPR003657WRKY domain
PfamPF031062.7E-24399456IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MEDSNGHGQE LAGQRSYMER ILRSLHAGHE DPPRESSNLL EEPSVLRGQP AAAFYTGTNT  60
CENLSSQADR YSTEQHQLSI TSGTSMWPEY CSDFSTLVEE SLELQPMMMS YDLRSIDTNN  120
ITPSRSVTAS CPASFSSFVD PLAADTIIRS HGMLLHQFQS APGLTSSGAG DDCNLIKAAG  180
EQEHELSWID FDDGLNSAMM MSQEVEAAAS THEPLPSDQM SSLVAASCDQ NMLVGKKIGR  240
NSRPDFAASH GSHETVNTRR GTSSTKQLPG TPNSDQSLSS SVSDGSADWT TNSGSTIQQQ  300
QQHKEQELQL VGCDAVDESG KTTTSQADGG AGVEKGAAAA VDEEEEEEEE EGEEDQNKTC  360
KTKKQLHSPI LRARKKGQMK RVKQPKHCIK TRTDVEIMDD NFKWRKYGQK AVKNSPYPRN  420
YYRCSTQNCP VRKRVERCAD DPGFVLTTYE GTHTHQSPAF ARLPIGAYFG AFGQPFMDPL  480
SQTAYIHSLG TSAASLLPLF AQRDLTCNPN YVGSLSSSML SHREALNSYY SRMGTIPPPS  540
IISASQQFGG GQLIDPLLVK LQHMEYNLRS ETQNSVSGTQ SEMQSPQAGP MIDFSTHPSS  600
GSQPMLQDAS PQVWEAVRAT QGQIAEAAAL QQFDDNKFIE PAKLWSSGQD FVGGRDGLLR  660
PPTTTLCRSL QSGCRTDEGL LEDMIRPALP RYGLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-23389459878Probable WRKY transcription factor 4
2lex_A1e-23389459878Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-32WRKY DNA-binding protein 57