PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0189s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 826aa MW: 90352.7 Da PI: 6.338 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.1 | 4.6e-21 | 114 | 169 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e lF+++++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k Sphfalx0189s0018.1.p 114 KKRYHRHTARQIQEMEMLFKECPHPDDKQRQQLSRELGLEPRQVKFWFQNRRTQMK 169 688899***********************************************998 PP | |||||||
2 | START | 197.1 | 8e-62 | 320 | 548 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla.. 77 la +a++el+++a+a++p+W+ + e +n++e++ +f+++ + ++ea r++g+v +++ lve+l+d+ qW e+++ Sphfalx0189s0018.1.p 320 LAVTAMEELLRMAQADQPLWMPVDsgniELLNYEEYTLQFPRGIGfarphagLKTEATRETGLVMSDAVSLVETLMDSC-QWMEMFPcm 407 6789******************99999999************999**********************************.********* PP ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS START 78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157 +a t++v+s+g galqlm+aelq+lsplvp R+ +f+Ry++q+ +g w++vdvSvds +++p +s++R++++pSg+li+++ Sphfalx0189s0018.1.p 408 vsRALTVDVLSTGvngnrhGALQLMYAELQVLSPLVPtREIYFLRYCKQHAEGIWAVVDVSVDSIRDNP-PPSLMRCRRRPSGMLIQDT 495 *********************************************************************.7****************** PP CTCEEEEEEEE-EE--....SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 158 snghskvtwvehvdlk....grlphwllrslvksglaegaktwvatlqrqcek 206 sng++kvt veh++++ g+ +h l+r lv+sg+a+ga++w atlqrqce+ Sphfalx0189s0018.1.p 496 SNGYCKVTAVEHMEYNddrgGAAVHRLYRDLVNSGMAFGAQRWIATLQRQCER 548 *************99632226677***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.6E-20 | 97 | 171 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 97 | 165 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 111 | 171 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-19 | 112 | 175 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.92E-19 | 113 | 171 | No hit | No description |
Pfam | PF00046 | 1.4E-18 | 114 | 169 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 146 | 169 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 46.901 | 310 | 551 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.14E-37 | 311 | 550 | No hit | No description |
CDD | cd08875 | 3.03E-122 | 314 | 547 | No hit | No description |
SMART | SM00234 | 4.9E-52 | 319 | 548 | IPR002913 | START domain |
Pfam | PF01852 | 2.6E-52 | 320 | 548 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.2E-5 | 389 | 548 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.21E-21 | 578 | 750 | No hit | No description |
SuperFamily | SSF55961 | 3.21E-21 | 777 | 817 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 826 aa Download sequence Send to blast |
MRLGGVTVQV TGNGTLGRGS FADLGGMPPG VMAPPRPVPP LTGQRHGKPY SSPSLSLAPP 60 MCLEGQREMT SQTVEGEQQQ KNKEEMQEYE SRSGSDNMEG GSGDDQDPDQ PPRKKRYHRH 120 TARQIQEMEM LFKECPHPDD KQRQQLSREL GLEPRQVKFW FQNRRTQMKA QTERTENTLL 180 RQENDKLRSE NILIREALKN PTCQHCGGGP STFGEMSLHE QQLRIENSRL KEELDRVSAL 240 AAKYLGRSIP SYVPMQITPI APLSLPSSSL DPQAVAGTSS FGGHPTAPGD MDIVHNPSVV 300 DVATRPGGLT EAEKPLVVDL AVTAMEELLR MAQADQPLWM PVDSGNIELL NYEEYTLQFP 360 RGIGFARPHA GLKTEATRET GLVMSDAVSL VETLMDSCQW MEMFPCMVSR ALTVDVLSTG 420 VNGNRHGALQ LMYAELQVLS PLVPTREIYF LRYCKQHAEG IWAVVDVSVD SIRDNPPPSL 480 MRCRRRPSGM LIQDTSNGYC KVTAVEHMEY NDDRGGAAVH RLYRDLVNSG MAFGAQRWIA 540 TLQRQCERLA SLMQAGNLPS RDMVGPVPTA DGRRSMLKLA QRMTNNFCAG VSASTLHTWT 600 TLASSSGEDD GVRVMTRNSI DNPGEPHGII LSAATSIWLP VSPQRVFHFL RDESLRSKWD 660 ILSNGGVVTE MAHISKGQDP GNNVSLLGVN PLNSNQSNML ILQESCTDAF GSLVIYAPVD 720 IPAMDLVMRG GDPAYVALLP SGFAILPDGP ENRRTITAAS HGAGAQLTDS PRTMTGGGSL 780 LTVAFQILVS TIPSARLSLE SVATVNNLIS RTVQRIKAAL NCEEV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024394838.1 | 0.0 | homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Refseq | XP_024394839.1 | 0.0 | homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | Q147S4 | 0.0 | Q147S4_PHYPA; Class IV HD-Zip protein HDZ43 | ||||
STRING | PP1S209_10V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0189s0018.1.p |