PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0185s0020.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

SBP

Protein Properties

Length: 1260aa MW: 137557 Da PI: 6.8018

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0185s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.3	5.8e-40	218	295	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCe+hska ++ v+ l+qrfCqqCsrfh l efDe+krsCrrrL++hn+rrrk+q+ Sphfalx0185s0020.1.p 218 MCQVDNCKADLSKAKDYHRRHKVCEIHSKAVKASVTRLMQRFCQQCSRFHPLAEFDEGKRSCRRRLEGHNRRRRKTQP 295 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.4E-33	211	280	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.727	216	293	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.22E-36	217	297	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.5E-29	219	292	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.64E-10	1000	1126	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	130	1006	1036	IPR002110	Ankyrin repeat
CDD	cd00204	8.58E-9	1006	1126	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.2E-11	1006	1127	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	150	1067	1097	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	10.79	1067	1127	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	540	1107	1136	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1260 aa Download sequence Send to blast
MEREMNHLGV DSHRRSSLPS QQHQFFPGDS GKQPLVSNIV SRPMEHETGP WSSSSNRDRT 60 VVTQGGGNPS SRRKEWDSKS WNWDSEMFVA QPAFGRTTGG SANEGRQRHS ADENGGNQRS 120 QELTFQLEGS SGAPGQAQVG EGSSESELRS RSFFDKETPS PPQNGEKSLI RDDNAPEEAE 180 SLSLKLGGSS YTIVDEDGSG TRGVKRFRSS SPQSQSPMCQ VDNCKADLSK AKDYHRRHKV 240 CEIHSKAVKA SVTRLMQRFC QQCSRFHPLA EFDEGKRSCR RRLEGHNRRR RKTQPDSASR 300 AYLMGEEDLM GKGGAGLVGG LLHILAQLQA SSSLDRANVP IVDREALLRK AVLASLEDRT 360 APSWNQLIPN LDHLAAGLLS RQDQRAPSNG HAATDLSIET QYLLSRLAAG SSPEALALLL 420 QSNGQLSTAP RHAQDAPGSH PLAQEAAAGP VLQQTHASSS APDSLRMQAC PSQRLVGNSS 480 CGHAAVVSTP VPDSPHVSIE PFIRSTDSSS LARPIAERPM LNPDRLALQV DQAPPATPTV 540 QRLFPQQSTA NRSTAANGNN ASWRTDAGMS SAIGSRGSSM VSSFGTHETQ PSLRPIPADP 600 RPAVQQPAIV QLSDSSQSGS DEQLPVLSSA DSEKWTPTRR ISLKLFDRSP EDLPANLRMQ 660 IDVWLARIPT DMESYIRPGC VVLTIYVSMP HSAWVQLDRD LQGSLENLLS TCNDEFWHKG 720 RILVQVEHQR VMIVDGNIME KKFANPLRQP YIQSVRPLAI VAGQETKICC KGFNLGHSSG 780 TRLLCVYQGK HLSQDSCTSV EDEEADSASD ESDGERDEID NYGDSFVDDY GVVATTDKAE 840 LTVDHNFTLH GEHSDVVGRC FMEAEQNLRG GNSKPVIIAN TSMCKELCKL EEEIEAAALR 900 AADTAKREGL ESFHVLVCSE VARAVVEEDV ACFLHELGWY FQSSSYWQLN STSGSLDMVQ 960 AFRLKRLLVF SVERDWCTVV RKLLDMPFER VKSESFFTKL SHILQDDMSL LHQAVRRKCR 1020 PMVELLLAYV PSSLTKESDV GLETLQRIMQ FKLQWGNLFR PDMAGPAGLT PLHIAASMKD 1080 AEDVVDALTS DPCQVGLHAW VNKQDESGHT PLSLALEGGN VKSVELVRVK LALLDSTGGN 1140 VAINIPGDSF AHIPDGKFHE GASRSISNLP AAVKLPLWGD GSSASGRKHN AGKAPSCRAL 1200 ANRPGKHGAL HGYIPKSFLL SLVSIAAVCV CVCLVFRNAP CVKFVMPPFR WEHLGGGPQ*

Sequence ? help Back to Top

Protein Sequence Length: 1260 aa Download sequence Send to blast

MEREMNHLGV DSHRRSSLPS QQHQFFPGDS GKQPLVSNIV SRPMEHETGP WSSSSNRDRT  60
VVTQGGGNPS SRRKEWDSKS WNWDSEMFVA QPAFGRTTGG SANEGRQRHS ADENGGNQRS  120
QELTFQLEGS SGAPGQAQVG EGSSESELRS RSFFDKETPS PPQNGEKSLI RDDNAPEEAE  180
SLSLKLGGSS YTIVDEDGSG TRGVKRFRSS SPQSQSPMCQ VDNCKADLSK AKDYHRRHKV  240
CEIHSKAVKA SVTRLMQRFC QQCSRFHPLA EFDEGKRSCR RRLEGHNRRR RKTQPDSASR  300
AYLMGEEDLM GKGGAGLVGG LLHILAQLQA SSSLDRANVP IVDREALLRK AVLASLEDRT  360
APSWNQLIPN LDHLAAGLLS RQDQRAPSNG HAATDLSIET QYLLSRLAAG SSPEALALLL  420
QSNGQLSTAP RHAQDAPGSH PLAQEAAAGP VLQQTHASSS APDSLRMQAC PSQRLVGNSS  480
CGHAAVVSTP VPDSPHVSIE PFIRSTDSSS LARPIAERPM LNPDRLALQV DQAPPATPTV  540
QRLFPQQSTA NRSTAANGNN ASWRTDAGMS SAIGSRGSSM VSSFGTHETQ PSLRPIPADP  600
RPAVQQPAIV QLSDSSQSGS DEQLPVLSSA DSEKWTPTRR ISLKLFDRSP EDLPANLRMQ  660
IDVWLARIPT DMESYIRPGC VVLTIYVSMP HSAWVQLDRD LQGSLENLLS TCNDEFWHKG  720
RILVQVEHQR VMIVDGNIME KKFANPLRQP YIQSVRPLAI VAGQETKICC KGFNLGHSSG  780
TRLLCVYQGK HLSQDSCTSV EDEEADSASD ESDGERDEID NYGDSFVDDY GVVATTDKAE  840
LTVDHNFTLH GEHSDVVGRC FMEAEQNLRG GNSKPVIIAN TSMCKELCKL EEEIEAAALR  900
AADTAKREGL ESFHVLVCSE VARAVVEEDV ACFLHELGWY FQSSSYWQLN STSGSLDMVQ  960
AFRLKRLLVF SVERDWCTVV RKLLDMPFER VKSESFFTKL SHILQDDMSL LHQAVRRKCR  1020
PMVELLLAYV PSSLTKESDV GLETLQRIMQ FKLQWGNLFR PDMAGPAGLT PLHIAASMKD  1080
AEDVVDALTS DPCQVGLHAW VNKQDESGHT PLSLALEGGN VKSVELVRVK LALLDSTGGN  1140
VAINIPGDSF AHIPDGKFHE GASRSISNLP AAVKLPLWGD GSSASGRKHN AGKAPSCRAL  1200
ANRPGKHGAL HGYIPKSFLL SLVSIAAVCV CVCLVFRNAP CVKFVMPPFR WEHLGGGPQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-30	210	292	2	84	squamosa promoter binding protein-like 4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	PP1S47_14V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-110	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	Sphfalx0185s0020.1.p