PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0185s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ARF | ||||||||
Protein Properties | Length: 810aa MW: 89282.8 Da PI: 6.3472 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.6 | 2.7e-24 | 153 | 254 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ aee+ ++++++ +l+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F Sphfalx0185s0016.1.p 153 FCKTLTASDTSTHGGFSVPRRAAEEClpeldyTMNPPCQ-ELVAKDVHGAEWKFRHIYRGHPRRHLLTTGWSVFVSSKRLVAGDSVLFL 240 99*****************************97777785.9************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + ++++l+++v+r+ Sphfalx0185s0016.1.p 241 R--GENEQLRLGVRRA 254 3..3777789999986 PP | |||||||
2 | Auxin_resp | 108.2 | 8.6e-36 | 279 | 361 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa +k F+v+Y+P+++ seFv++++k++ka+++ svGmRfkm+fe+ d err++Gt++g+ d+dpvrWpnS WrsLk Sphfalx0185s0016.1.p 279 AAHAAMEKLRFSVIYHPSTCLSEFVIPYHKYVKAINSTASVGMRFKMRFESADLTERRYAGTITGIGDVDPVRWPNSYWRSLK 361 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-40 | 145 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-41 | 147 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.97E-22 | 152 | 253 | No hit | No description |
PROSITE profile | PS50863 | 12.619 | 153 | 255 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-24 | 153 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-22 | 153 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.0E-32 | 279 | 361 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.7E-10 | 699 | 781 | No hit | No description |
Pfam | PF02309 | 7.2E-6 | 700 | 739 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.193 | 703 | 786 | IPR000270 | PB1 domain |
Pfam | PF02309 | 8.5E-7 | 748 | 785 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 810 aa Download sequence Send to blast |
MMMRSSNGSA IMPLQQRNAS PPMSRCPTLL PSSSDSSTVG IPGNDDDLDS ELWHACAGPL 60 VSLPPVNSLV VYWPQGHLEQ VANCTPQAVV QPPIPQYNLP PQILCRLTDI TLMAHPDTDK 120 LYAQMDLTPV RESEKPLVSE EPPPAAKRKS NSFCKTLTAS DTSTHGGFSV PRRAAEECLP 180 ELDYTMNPPC QELVAKDVHG AEWKFRHIYR GHPRRHLLTT GWSVFVSSKR LVAGDSVLFL 240 RGENEQLRLG VRRAPKQQQD APSMVVSNQS TQIGVLATAA HAAMEKLRFS VIYHPSTCLS 300 EFVIPYHKYV KAINSTASVG MRFKMRFESA DLTERRYAGT ITGIGDVDPV RWPNSYWRSL 360 KVEWDESVAS ERQERVSLWE IEPFNSAAIL PPLSLGQNPS QKRRPNKPTL ATCQSTPESF 420 HSTKLARVLV HDQGAPKLQE DEEGGTSWRV SGRAVKCEGV LKSPLMAQDS TGREGWLPMQ 480 QPKICLGGDI SRSLQRCDFT GVLTLQPSQH NVEREQEHLR LCVQNYLREH KEHKDSPSPR 540 LSSTGKPLCG SDDIQNSVNS SSVWDPAMKL LWPTNPPHLA SMPESEDLSS PAPIWPITIP 600 PVMPDGAASS SHSVGARGES FPSWEDHEGK LIASTPPPAR PQCKLFGFAL NGDNPPTSAK 660 PLKEAEVDVE HLSTGPTNSG DSNSRELAVK TDAVLKHSPF PVRSFIKVHK QGEPGRSVDL 720 TRYESYSELK CALENMFSLH GQLESPDKQW QVVYTDHEGD VLLVGDDPWG EFCSCVRSLK 780 IVSSATEEGS EDEVQADVQD MSPLMPGPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-126 | 40 | 386 | 9 | 357 | Auxin response factor 1 |
4ldw_A | 1e-126 | 40 | 386 | 9 | 357 | Auxin response factor 1 |
4ldw_B | 1e-126 | 40 | 386 | 9 | 357 | Auxin response factor 1 |
4ldx_A | 1e-126 | 33 | 386 | 2 | 357 | Auxin response factor 1 |
4ldx_B | 1e-126 | 33 | 386 | 2 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q2LAJ3 | 1e-133 | ARF2A_SOLLC; Auxin response factor 2A | ||||
Swissprot | Q653U3 | 1e-133 | ARFQ_ORYSJ; Auxin response factor 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 1e-126 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0185s0016.1.p |
Publications ? help Back to Top | |||
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