PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0184s0015.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 542aa    MW: 61223.2 Da    PI: 5.4693
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0184s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-10512537127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ykt+lCr+far G+C  G+ C+FaHg+
  Sphfalx0184s0015.1.p 512 YKTKLCRYFAR-GYCALGPHCTFAHGE 537
                           9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530982.53E-1267182IPR012337Ribonuclease H-like domain
PfamPF134562.2E-1569184No hitNo description
SuperFamilySSF578509.54E-15209292No hitNo description
Gene3DG3DSA:3.30.40.107.7E-6211273IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF000971.5E-4212257IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001841.9E-4212259IPR001841Zinc finger, RING-type
PROSITE profilePS500899.981212257IPR001841Zinc finger, RING-type
PROSITE patternPS005180230239IPR017907Zinc finger, RING-type, conserved site
SMARTSM006471.2E-12280356IPR002867IBR domain
PfamPF014854.5E-11285356IPR002867IBR domain
SMARTSM006470.32373427IPR002867IBR domain
SuperFamilySSF578507.39E-16374433No hitNo description
PfamPF014853.1E-6377425IPR002867IBR domain
Gene3DG3DSA:4.10.1000.101.1E-13510541IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-8510541IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126511538IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-6511537IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8512537IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAGALMQDPR EMERCRLDVV GGGGMGRGEV SGHRIDDGGE KGLGGGGGRG EFDGSRYSFE  60
LRFQGERNGD GHIGYAWMLF DPANAVVSQD DKYVGQGMSW HVAEYTALLE GLTVARSLNL  120
KHIVAYGTSR IVCNQVNRVW RAKQATLLDL WSQVMESIRD LYSFKLKYMP RDRRSPVNAL  180
ANDAIIAHLA GHPITAVTST SSKEQAPTLE HCPICLEEKP SSDMSLVEHC LHKFCEPCMK  240
RHAEVQVQAG QVPVRCPQAD CLQPLTLAKC QKLLTVDVFN SLTKRLAEAS IPEGDRVYCP  300
YRNCSALMNK TGLRSSQNAN SSSNPHAMNI GRTECVECAR SFCVECRVPW HLNRSCQEYQ  360
QLPLHLRDSE DSNLYKLAEN QNWQRCRKCC RMIELAEGCY HMTCRCGYEF CYTCGAEWKD  420
KKQSCSCKLW DERNLVHPLL IFDSDDDEDV DLFVEYDESD VEDGFLGELY DLPWLNPTDH  480
ADHIPFELMQ LFDDEDDMVE DFFQGSPPLQ YYKTKLCRYF ARGYCALGPH CTFAHGEGEL  540
R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382068.11e-140uncharacterized protein LOC112285450
TrEMBLA0A2K1K6U81e-139A0A2K1K6U8_PHYPA; RBR-type E3 ubiquitin transferase
STRINGPP1S62_86V6.11e-139(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-06C3H family protein