PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0177s0026.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

NF-YC

Protein Properties

Length: 209aa MW: 23893.5 Da PI: 6.341

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0177s0026.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	173.4	2.5e-54	40	144	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ql++fw++q ie++++f+nh+lPlarikki+k+dedvkmi+aeaPvl++kace+fileltlrsw+h+eenkrrtl+++dia a+tr Sphfalx0177s0026.2.p 40 QLQTFWQQQiqeIEQVNEFRNHQLPLARIKKIMKSDEDVKMIAAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRG 128 89***9988899*********************************************************************** PP NF-YC 87 difdflvdivprdelk 102 difdflvdivprdelk Sphfalx0177s0026.2.p 129 DIFDFLVDIVPRDELK 144 ***********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.14E-32	26	134	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	9.6E-37	54	126	IPR009072	Histone-fold
Pfam	PF00808	1.8E-21	62	125	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MAAHQMPTTA PGMPHPNAVM ATQYAHSQPQ LHYQHLQKQQ LQTFWQQQIQ EIEQVNEFRN 60 HQLPLARIKK IMKSDEDVKM IAAEAPVLFA KACEMFILEL TLRSWIHTEE NKRRTLQRND 120 IAGAITRGDI FDFLVDIVPR DELKDEDLAV PWSGVPGEPV PYGNMYYPPI PGQPMHHPMV 180 TPEMMVGQPA IAQNPQMMYQ PPQQGHMQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-53	48	140	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	RRTLQRN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369382.1	1e-100	nuclear transcription factor Y subunit C-2-like
Swissprot	Q9SMP0	6e-67	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2K1KUV7	3e-94	A0A2K1KUV7_PHYPA; Uncharacterized protein
STRING	PP1S315_9V6.3	3e-99	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-60	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Sphfalx0177s0026.2.p

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]