PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0176s0027.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 731aa MW: 79962.4 Da PI: 5.454

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0176s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.6e-11	500	545	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++ +++++++r l+P kK + ++iL +A++YI +L+ Sphfalx0176s0027.1.p 500 HKLAERGRRSKFKEKLHTIRALVPLT-----KKKDRVSILSHAIDYILQLK 545 999********************9.....899*************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.567	495	544	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-13	499	563	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-8	500	544	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-12	500	559	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-10	500	549	No hit	No description
SMART	SM00353	3.5E-10	501	550	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MLEDSVISES RSLADIVQSL DWTTVDYGDD VRDFPFLDSI VDACPQLLDP ETCCPQGAQL 60 MQMASAAGVV TSISPTAVPE LPEVDMGFQP LVLPLMNHQQ LLQQQQQLMN CKYMPDDFNE 120 SLRDSGTILR SEEPYFQWTA QGNQSLFFDD DGSQNCLLVY EHLDSTTTTS DHKFMFRGSQ 180 LDSCINDHLM IKTSSSSSDC LVAGDAVLSP VACNKWVDPD MLVGSSQKLV AERVPVESLF 240 VAASTTGLIS EQCSNGVHNS SPSGLQQRSS SCSFSHLRLA EKEEEKEEGE ERSRLCYLYG 300 STDHEAAWQL MGTTAKLEAS ASANPSDDDP FFHHLRQTST RYSSAASSFT QSLLASSWAS 360 ATDGSSPTMD HLHHVHNNVE LAAWPTPSRF LHSHKSPFTR SCGSYSNYSG PLQMCGVGDR 420 NNLRRCAPRQ SLLRRWTEKI VPVLQQEARR QKQLDDLEQL ELAAKCNPNP TLTSCAGQQA 480 TQSAMVRSNP AQNRAAAHIH KLAERGRRSK FKEKLHTIRA LVPLTKKKDR VSILSHAIDY 540 ILQLKTEVAE LQKSQQEEQA AAQECDLAAE AGSSSSSLRI TAASGSGTST TNATAAPATS 600 RLDLKVAVSC PGNESGDHQP QQQQQQQHLV INVKVADKLH AQKLISLLTA SKDLGLDIRS 660 LDCRCINDQF HVAVKAVVQA CDQGAALEEH GLQNNMLRSS CSPEQLQETL TRVLDFPFEI 720 SPGSVIPSSG *

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MLEDSVISES RSLADIVQSL DWTTVDYGDD VRDFPFLDSI VDACPQLLDP ETCCPQGAQL  60
MQMASAAGVV TSISPTAVPE LPEVDMGFQP LVLPLMNHQQ LLQQQQQLMN CKYMPDDFNE  120
SLRDSGTILR SEEPYFQWTA QGNQSLFFDD DGSQNCLLVY EHLDSTTTTS DHKFMFRGSQ  180
LDSCINDHLM IKTSSSSSDC LVAGDAVLSP VACNKWVDPD MLVGSSQKLV AERVPVESLF  240
VAASTTGLIS EQCSNGVHNS SPSGLQQRSS SCSFSHLRLA EKEEEKEEGE ERSRLCYLYG  300
STDHEAAWQL MGTTAKLEAS ASANPSDDDP FFHHLRQTST RYSSAASSFT QSLLASSWAS  360
ATDGSSPTMD HLHHVHNNVE LAAWPTPSRF LHSHKSPFTR SCGSYSNYSG PLQMCGVGDR  420
NNLRRCAPRQ SLLRRWTEKI VPVLQQEARR QKQLDDLEQL ELAAKCNPNP TLTSCAGQQA  480
TQSAMVRSNP AQNRAAAHIH KLAERGRRSK FKEKLHTIRA LVPLTKKKDR VSILSHAIDY  540
ILQLKTEVAE LQKSQQEEQA AAQECDLAAE AGSSSSSLRI TAASGSGTST TNATAAPATS  600
RLDLKVAVSC PGNESGDHQP QQQQQQQHLV INVKVADKLH AQKLISLLTA SKDLGLDIRS  660
LDCRCINDQF HVAVKAVVQA CDQGAALEEH GLQNNMLRSS CSPEQLQETL TRVLDFPFEI  720
SPGSVIPSSG *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67110.1	5e-09	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0176s0027.1.p