PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0174s0019.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | CO-like | ||||||||
Protein Properties | Length: 613aa MW: 65443.1 Da PI: 6.3171 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.3 | 9.7e-06 | 9 | 39 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++e +++ +C+ ++ lC +C + H g Sphfalx0174s0019.2.p 9 ACDFCGEGRATVYCRADSARLCLSCDRHVH-G 39 5******99******************999.4 PP | |||||||
2 | CCT | 65.6 | 1.4e-22 | 555 | 598 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a+lRYkeK+k+RkF+KkirYesRK++A+ R+RvKGrFvk+ Sphfalx0174s0019.2.p 555 RDSAMLRYKEKKKNRKFDKKIRYESRKERADIRKRVKGRFVKAG 598 899**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.2E-10 | 5 | 52 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.93E-6 | 10 | 52 | No hit | No description |
PROSITE profile | PS50119 | 9.286 | 10 | 52 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.6E-17 | 555 | 597 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.338 | 555 | 597 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MEGAGAGGAC DFCGEGRATV YCRADSARLC LSCDRHVHGA NALSRRHLRT LLCEGCNLRP 60 SAVRCPEENN VGLCQSCDWD SHGRMRRRRN SNSNSSSSAA VVVATSAASS QHLTRHPFDC 120 FSGCPSAAEL SILWGCDLLT HAAAAAAPPP PPRSLAGFNN GGSGNCRGRV GPVAAAAFAA 180 IISGAGPPPL LLAKSPVPTG GGGGAVLLGK GGNGSKHQSR EAIVQQLQKL QLLDPQQVQQ 240 QQQMEAPMLL QSSSKKQHPV SFVSSPSQPL QAAAAVLDQN QMQQYQQQQP ETSPNQPLHS 300 KSDTTTTANL QPSSDSQILT PLEMMMMLPK TEACNNNNGL IMQGGDAAFW HSSSSCQQQL 360 WGQNMQDLGI CKGGEEDRDP CEGFSMADLS FDNYEDIFSC TQGMSSACFD DIQAEEAGCT 420 VSLGQDSVDE KPHDQHVQSI PESELLEATT DGAMSGSQSQ VYESRSAGPP PSPERTEVGM 480 MMMGAMGLSK NLNMDMQQLV MRPTGSSLSL SLSGLSGDDS GDYYDCTTAV SSMLINADPS 540 WGPTSPDSGA LTQARDSAML RYKEKKKNRK FDKKIRYESR KERADIRKRV KGRFVKAGQP 600 YDYDPTGPTR SF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 2e-33 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0174s0019.2.p |