PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0174s0019.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 614aa    MW: 65571.2 Da    PI: 6.3171
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0174s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.39.7e-06939536
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                           C+ ++e +++ +C+ ++  lC +C  + H g
  Sphfalx0174s0019.1.p  9 ACDFCGEGRATVYCRADSARLCLSCDRHVH-G 39
                          5******99******************999.4 PP
2CCT65.61.4e-22556599144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R+ a+lRYkeK+k+RkF+KkirYesRK++A+ R+RvKGrFvk+ 
  Sphfalx0174s0019.1.p 556 RDSAMLRYKEKKKNRKFDKKIRYESRKERADIRKRVKGRFVKAG 599
                           899**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-10552IPR000315B-box-type zinc finger
CDDcd000212.49E-61052No hitNo description
PROSITE profilePS501199.2861052IPR000315B-box-type zinc finger
PfamPF062034.6E-17556598IPR010402CCT domain
PROSITE profilePS5101715.338556598IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MEGAGAGGAC DFCGEGRATV YCRADSARLC LSCDRHVHGA NALSRRHLRT LLCEGCNLRP  60
SAVRCPEENN VGLCQSCDWD SHGRMRRRRN SNSNSSSSAA VVVATSAASS QHLTRHPFDC  120
FSGCPSAAEL SILWGCDLLT HAAAAAAPPP PPRSLAGFNN GGSGNCRGRV GPVAAAAFAA  180
IISGAGPPPL LLAKSPVPTG GGGGAVLLGK GGNGSKHQSR EAIVQQLQKL QLLDPQQVQQ  240
QQQMEAPMLL QSSSKKQHPV SFVSSPSQPL QAAAAVLDQN QMQQYQQQQP ETSPNQPLHS  300
KSDTTTTANL QPSSDSQILT PLEMMMMLPK TEACNNNNGL IMQGGDAAFW HSSSSCQQQQ  360
LWGQNMQDLG ICKGGEEDRD PCEGFSMADL SFDNYEDIFS CTQGMSSACF DDIQAEEAGC  420
TVSLGQDSVD EKPHDQHVQS IPESELLEAT TDGAMSGSQS QVYESRSAGP PPSPERTEVG  480
MMMMGAMGLS KNLNMDMQQL VMRPTGSSLS LSLSGLSGDD SGDYYDCTTA VSSMLINADP  540
SWGPTSPDSG ALTQARDSAM LRYKEKKKNR KFDKKIRYES RKERADIRKR VKGRFVKAGQ  600
PYDYDPTGPT RSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-33B-box type zinc finger protein with CCT domain