PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0174s0009.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 848aa    MW: 92349.5 Da    PI: 6.6519
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0174s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-18664357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le++++++++ps  +r++L k +    +++ +q+kvWFqNrR +ek+
  Sphfalx0174s0009.1.p  6 KYVRYTNEQVEALERVYHECPKPSSIRRQQLIKDCpilaNIEPKQIKVWFQNRRCREKQ 64
                          5678*****************************************************97 PP
2START158.26.3e-501713772203
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+ +e+v+ka+ ++  W +++ +++g++ + +++ s++++g a+ra+g+v  ++   v+e+l+d++ W  +++  ++l    +g  
  Sphfalx0174s0009.1.p 171 IAEETVTEFVAKATGTAIDWIQLPGMKPGPDAIGIVSISHGCPGVAARACGLVGLEPS-KVAEILKDRQSWLPDCRHLDILGSFPTGng 258
                           7899******************************************************.8888888888******************9* PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l++++++a+++l+p Rdf ++Ry+  l++g +vi+++S++  q  p+    +s+vRae++pSg+li+++++g++ +++v+h dl+
  Sphfalx0174s0009.1.p 259 GTVELIYTQMYAPTTLAPpRDFCTLRYTTLLEDGNLVICERSLTGAQGGPTmppVQSFVRAEMFPSGYLIRQCDGGGCIIHIVDHLDLE 347
                           *********************************************99999888899********************************* PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrq 203
                            ++++++lr+l+ks+++ ++kt+  +l+++
  Sphfalx0174s0009.1.p 348 PWSVPEVLRPLYKSSAVLAQKTTIGALRHL 377
                           **********************99888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.418165IPR001356Homeobox domain
SMARTSM003895.4E-15369IPR001356Homeobox domain
SuperFamilySSF466891.45E-16568IPR009057Homeodomain-like
CDDcd000863.69E-16666No hitNo description
PfamPF000469.0E-16764IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-18864IPR009057Homeodomain-like
CDDcd146860.005385894No hitNo description
PROSITE profilePS5084825.608161389IPR002913START domain
CDDcd088751.85E-76165381No hitNo description
SuperFamilySSF559612.2E-38170382No hitNo description
SMARTSM002342.4E-39170380IPR002913START domain
PfamPF018522.6E-47171377IPR002913START domain
Gene3DG3DSA:3.30.530.205.8E-24172375IPR023393START-like domain
PfamPF086701.5E-44703845IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MDASGKYVRY TNEQVEALER VYHECPKPSS IRRQQLIKDC PILANIEPKQ IKVWFQNRRC  60
REKQRKEATR LVSVNAKLTA LNKLLMGENE RLAKHTSQLT LDNHFLRRQL QQQQHQVAPI  120
PSSNKHQLPA DQAAMASTDT SSDSVVTVGL PPQPTPQHSP RATGPAGLLS IAEETVTEFV  180
AKATGTAIDW IQLPGMKPGP DAIGIVSISH GCPGVAARAC GLVGLEPSKV AEILKDRQSW  240
LPDCRHLDIL GSFPTGNGGT VELIYTQMYA PTTLAPPRDF CTLRYTTLLE DGNLVICERS  300
LTGAQGGPTM PPVQSFVRAE MFPSGYLIRQ CDGGGCIIHI VDHLDLEPWS VPEVLRPLYK  360
SSAVLAQKTT IGALRHLRRL AQEASDTVGL RTGQQPAVLR GLSQRLARGF NQAVNGFPDD  420
GWAAIVSDGM DDVSVLLNES PPTTKGMLGQ VATDRLLCSL GGGILCAKAS MLLQNVPPAL  480
LIRFLREHRS EWADCDIDAD AAAAFHTSTR NRSAGHRQLP LPLAHSVEQE EFLEVVKLAR  540
QGGLSDNIHT RDNFLLQLCS GVDENAVGAC AQLVFAPVDV AVSDDVPLLP SGFRVIPLDC  600
SLVDGLGLSR TLDLASTLEV GTDASRETGA VMMNSNLRSV LTIAFQFAYE AHTREACASM  660
ARRYVRTVVA SVQRVAMALA PSHLPANLGG TQLPPGSPDT VILAHRILQS YRLHLGMELT  720
SSEPGDDEGL FKAFWHHSDA ILCCAWKQGL PEFTFGNQAG LEMLETTSGA LQDLAWEKTL  780
DENGRKTAYT DFTQVLQQGY AYLPAGVRIS SMGRPVTYER AIAWKVLADD ETSRCIAFLF  840
KNWSFLT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5305560.0KU530556.1 Sphagnum sp. SB-2016 C3HDZ2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399219.10.0homeobox-leucine zipper protein HOX32-like isoform X2
RefseqXP_024399220.10.0homeobox-leucine zipper protein HOX32-like isoform X3
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0Y0G9Y60.0A0A0Y0G9Y6_9BRYO; C3HDZ1 (Fragment)
STRINGPP1S15_11V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]