PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0170s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | LBD | ||||||||
Protein Properties | Length: 93aa MW: 10325.8 Da PI: 6.7874 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 47.9 | 3.8e-15 | 1 | 43 | 45 | 87 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +l++lp+ +red ++sl+yeA+ar++dPvyG+vg i+ lqqq+ Sphfalx0170s0024.1.p 1 MLHELPPPHREDCVNSLAYEADARVQDPVYGCVGAISVLQQQV 43 7899*************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.646 | 1 | 60 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-13 | 1 | 43 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MLHELPPPHR EDCVNSLAYE ADARVQDPVY GCVGAISVLQ QQVFTSFLLS SPFLAHETSL 60 KRSQTLSLNH HHYAPLKLQG ITQVSFSINP LW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-17 | 1 | 43 | 55 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-17 | 1 | 43 | 55 | 97 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1L087 | 6e-25 | A0A2K1L087_PHYPA; Uncharacterized protein | ||||
STRING | PP1S69_130V6.1 | 2e-21 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-19 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0170s0024.1.p |