PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0170s0003.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 283aa MW: 29998.7 Da PI: 6.5315

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0170s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.6	1.6e-34	59	113	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Sphfalx0170s0003.1.p 59 KQRLRWTPELHERFVDAVTQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 113 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.523	56	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-33	57	114	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-18	58	113	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.7E-26	59	114	IPR006447	Myb domain, plants
Pfam	PF00249	9.4E-10	61	112	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-24	146	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MYQTSKFSAA SSLMPQLGGG SQPAVEPWAQ SSAAAPSYSA GSPGASSGGG GTGSGSAAKQ 60 RLRWTPELHE RFVDAVTQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYIPDS 120 FSDGGTSEKK KNPADLFPSL DATSGIQITE ALRMQMEVQK RLHEQLEVQR NLQLRIEAQG 180 KYLQQIMEEQ QRLSAPALTS TPVAATNDAR GELAVIAPAL ELPEIGDVGG KLERKSSLPD 240 AATTPEVPCD PAGSLVPTTQ ASRLSSQPPQ TEYVVEQEYV GS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-26	59	116	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-26	59	116	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-27	59	116	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-27	59	116	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-27	59	116	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-27	59	116	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-26	59	116	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-26	59	116	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-26	59	116	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-26	59	116	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-26	59	116	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-26	59	116	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024394212.1	1e-89	myb-related protein 2-like
Swissprot	Q9SJW0	3e-77	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2K1JK89	3e-88	A0A2K1JK89_PHYPA; Uncharacterized protein
STRING	PP1S269_36V6.1	5e-89	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-77	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0170s0003.1.p