PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0167s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | G2-like | ||||||||
Protein Properties | Length: 429aa MW: 46047.4 Da PI: 6.7776 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.9 | 3.1e-30 | 242 | 295 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Sphfalx0167s0006.1.p 242 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 295 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.04E-19 | 239 | 299 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.927 | 239 | 298 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-30 | 241 | 300 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.0E-24 | 243 | 295 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-7 | 245 | 294 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MMVREDDAHV SEWENGLPTD EELTPLSHSL ISPALASAFS IKHEPAKTAV DVQRGSRATL 60 LNLRNHKAPI TSFDSFPSFQ GHENRGGHSY VGDARVGDGG GRSGRPVGGN GGIRSGDEAE 120 RVIGGGANQQ GPSSHPSGPY PVAGAGLAAP GNYIGGSDET SFNPGDERLD QGSLPYMMSY 180 AGGSPYERRP ENSYGAMGDD SNKGGGSSKN VHKRGDSESE DDDSAGGPEN SGEEPNARTL 240 KRPRLVWTPQ LHKRFVDAVG HLGIKNAVPK TIMQLMNVEG LTRENVASHL QKYRLYLKRM 300 QGLSSEGPSA SDHLFASTPI PPNLSGPHYM PNHRDDVGPS PFASPTVPIP YTAIAPYPMG 360 PGHYGGYEQY PYSAVGRGLP QQSPQGDHRE HMMDNRNHQN HSHNYNHNHN QPSSPPQRIL 420 TLFPTSSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-33 | 242 | 298 | 1 | 57 | Transcription factor LUX |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00014 | PBM | Transfer from AT3G46640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024397412.1 | 1e-124 | uncharacterized protein LOC112292811 isoform X1 | ||||
Refseq | XP_024397413.1 | 1e-125 | uncharacterized protein LOC112292811 isoform X2 | ||||
TrEMBL | A0A2K1JD37 | 1e-123 | A0A2K1JD37_PHYPA; Uncharacterized protein | ||||
STRING | PP1S29_32V6.1 | 1e-123 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46640.3 | 9e-51 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0167s0006.1.p |