PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0167s0002.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 1781aa    MW: 194982 Da    PI: 6.1912
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0167s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-08925966346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +W+teE + + + ++++ ++ +++Ia+++  ++t  +c+++++ 
  Sphfalx0167s0002.2.p 925 PWSTEEKKCFFEKFAMYNKN-FSKIASHLE-HKTTADCVEFYYR 966
                           8****************988.*********.**********986 PP
2Myb_DNA-binding28.24.4e-0915231564346
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                            +WT++E e +++  + +G++ W++  + ++  ++l q+k ++q+
  Sphfalx0167s0002.2.p 1523 SWTQDEKETFAEILRNHGKD-WRLLHESLP-SKSLTQIKTYFQN 1564
                            7*****************99.*********.************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.54E-13910972IPR009057Homeodomain-like
PROSITE profilePS5129317.376921972IPR017884SANT domain
SMARTSM007171.9E-8922970IPR001005SANT/Myb domain
PfamPF002494.0E-6925966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-4925966IPR009057Homeodomain-like
SuperFamilySSF466891.64E-811631214IPR009057Homeodomain-like
PROSITE profilePS5129312.00911631214IPR017884SANT domain
SMARTSM007171.3E-411641212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.600.00111661210IPR009057Homeodomain-like
CDDcd001670.0013511681206No hitNo description
SuperFamilySSF466891.79E-1015161569IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-615161565IPR009057Homeodomain-like
PROSITE profilePS512939.33615191570IPR017884SANT domain
SMARTSM007172.7E-715201568IPR001005SANT/Myb domain
PfamPF002492.6E-715231564IPR001005SANT/Myb domain
CDDcd001676.42E-515231566No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1781 aa     Download sequence    Send to blast
MPVNHKAIGL SSTNGNGLGH RSKHRVQGRQ NGFYTDNGEY STPAARGAEP AAFFAAPSSV  60
ESNLAWKFEN DSFHVGSGAA VLSPVFNGSR SIDYRVKDVG DWHTQDPYVS PPVNGRDSSV  120
MIDQRFRPFH VHGFVESDRC LVDQECSKLV SGSANNLELS HRTSRDHRDR QQSKSDLYSR  180
KRGAFGHFDS GKDWISSDKE DGSRLDRYGT SSHENIFRDS QGGSNDSGYT HEWQSRGTST  240
LRGSLFGAGN GMIRNVGVRA HVLDSRTSSL LSPQHLSHST SPSARLEPVR DEVDLPSPPK  300
RPRLGWGQGL AKYEKKKVGD SDESPSPAAV STHAEGEPSA LPSTENGVDG WIAGDVSGSD  360
ARVSSPCCHS PANTSVVSVV SPSNQQVDSV SGLCSNRDSF EHNTIKPSDG EVVDAAEKPL  420
EKENLPTDNQ LEKESLRTQD SSSEESHLTV VAEQSETLQI AEIAVSSQKT ETGYCLTTGL  480
PACEQPVIEE QRVVCEDVLS DEGGLVGWTK HAILQRVEKL EFEIDQVEKE IGKIEINEVG  540
NDLHDLVTID QEIPAVHSSE RDEDCLMAMD EDLQEVSTVV ENGRDAVVTP SLPSFETPSA  600
ADISPKRPVL LADEYPWNSS PHLETRRDSP DVSQPQLMHP SEQGELGVDI LQESKSRVDL  660
EEFDSRDTKL EMRHETGEPF LGGQVMDSQP SLLGKVEHIE ANADLKERLD VCQTVALEDL  720
QNFADLLILK NQEQAQQAFE PFMHLLLPEL LVKGCSPLYC CPTDAPAWQQ NVESHNRNSQ  780
LILQKLTERW QCLKFKERVL TMRFRALKEF WRQGQQDLCK RRDFSKAAHR WEPERRNGCG  840
PPSQRTSLRL RPMHTSVGRR EAVSEEAQAM RKMMSEPPVE HLRSTLKMPA MILDEKERMS  900
RRFLNSNALV EDPISLEHER AGINPWSTEE KKCFFEKFAM YNKNFSKIAS HLEHKTTADC  960
VEFYYRNQKS EDFQKLQRRH QLKKRRDYSR SNSSYLATTT PASSRHREAH AARVEALTLA  1020
ASSATAAVTV GTKAVRSTNH HKVLDRGRGG TCSNDFSSLP AQSDSSKCVG SKESKIAACN  1080
LLAVAAGSPL AVSTSCMETP PCTLSSAVTP PTKLCRERTF VKNSVSGGPS IIRGCQLDQQ  1140
TAGQKGIRSL HLRREASKSA AEEMHSQWTD GERQVFTDAV ALFGKDFRSI ALLVRSKSQV  1200
QCRAFFSKSR KRLGLDHLVE QFHATMHARV EAATLSAQNS KHAYLVKPEV AEDVKLLPTA  1260
LVTDCQSQEE KIETKQGGDN ANVIVAGVVK TAKDLSQAGR TKWICEPWKD ASKNLVEELS  1320
DLDLVAAAAE MLVKSAVDIP QTSFGAQEAT NLEPPSTSGL AADSELDRHV PPSCDDVPGT  1380
VDMTEASSIA DAQICQEDEE ETAAAKGDGG SPIGVSPAIE REAAVVDQAA AALVGISAML  1440
LDKQDMKIMN PVTELKPGPF PAGLLANTER TACPSPVVPA TEWTISEVTS TRPATHNSAQ  1500
QTKEKVSRSG TGGEVKPRRE PTSWTQDEKE TFAEILRNHG KDWRLLHESL PSKSLTQIKT  1560
YFQNSKAKLG FPTTEGMGNT GGRGGGTRKR KAEDSDTNSN NAGSGGPLYH QKFSSVSPSE  1620
VDITSHQAKP GMGAPLSMGA KVAMGPAAVG TNNEYATLLG SLSGQPVDQE NLNISDIQKL  1680
IRQIVHANSC PPSSQPGGFS MFQSGVMPGS SFQGNQRVSH LRSQQQLVQP AAQKPSPMGT  1740
HQMQSLTPDI VLQNNQPVLH QAVHQLQQQQ GEFESLQLLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C4e-17882974394NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D4e-17882974394NUCLEAR RECEPTOR COREPRESSOR 2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.12e-38MYB family protein