PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0167s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | MYB | ||||||||
Protein Properties | Length: 2412aa MW: 262328 Da PI: 6.3308 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.5e-08 | 925 | 966 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W+teE + + + ++++ ++ +++Ia+++ ++t +c+++++ Sphfalx0167s0002.1.p 925 PWSTEEKKCFFEKFAMYNKN-FSKIASHLE-HKTTADCVEFYYR 966 8****************988.*********.**********986 PP | |||||||
2 | Myb_DNA-binding | 27.7 | 6.2e-09 | 1523 | 1564 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT++E e +++ + +G++ W++ + ++ ++l q+k ++q+ Sphfalx0167s0002.1.p 1523 SWTQDEKETFAEILRNHGKD-WRLLHESLP-SKSLTQIKTYFQN 1564 7*****************99.*********.************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.66E-13 | 910 | 972 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 17.376 | 921 | 972 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-8 | 922 | 970 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-4 | 925 | 966 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.6E-6 | 925 | 966 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.24E-8 | 1163 | 1214 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.009 | 1163 | 1214 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-4 | 1164 | 1212 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00187 | 1168 | 1206 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-6 | 1516 | 1565 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.89E-10 | 1516 | 1569 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.336 | 1519 | 1570 | IPR017884 | SANT domain |
SMART | SM00717 | 2.7E-7 | 1520 | 1568 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-7 | 1523 | 1564 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.92E-5 | 1523 | 1566 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2412 aa Download sequence Send to blast |
MPVNHKAIGL SSTNGNGLGH RSKHRVQGRQ NGFYTDNGEY STPAARGAEP AAFFAAPSSV 60 ESNLAWKFEN DSFHVGSGAA VLSPVFNGSR SIDYRVKDVG DWHTQDPYVS PPVNGRDSSV 120 MIDQRFRPFH VHGFVESDRC LVDQECSKLV SGSANNLELS HRTSRDHRDR QQSKSDLYSR 180 KRGAFGHFDS GKDWISSDKE DGSRLDRYGT SSHENIFRDS QGGSNDSGYT HEWQSRGTST 240 LRGSLFGAGN GMIRNVGVRA HVLDSRTSSL LSPQHLSHST SPSARLEPVR DEVDLPSPPK 300 RPRLGWGQGL AKYEKKKVGD SDESPSPAAV STHAEGEPSA LPSTENGVDG WIAGDVSGSD 360 ARVSSPCCHS PANTSVVSVV SPSNQQVDSV SGLCSNRDSF EHNTIKPSDG EVVDAAEKPL 420 EKENLPTDNQ LEKESLRTQD SSSEESHLTV VAEQSETLQI AEIAVSSQKT ETGYCLTTGL 480 PACEQPVIEE QRVVCEDVLS DEGGLVGWTK HAILQRVEKL EFEIDQVEKE IGKIEINEVG 540 NDLHDLVTID QEIPAVHSSE RDEDCLMAMD EDLQEVSTVV ENGRDAVVTP SLPSFETPSA 600 ADISPKRPVL LADEYPWNSS PHLETRRDSP DVSQPQLMHP SEQGELGVDI LQESKSRVDL 660 EEFDSRDTKL EMRHETGEPF LGGQVMDSQP SLLGKVEHIE ANADLKERLD VCQTVALEDL 720 QNFADLLILK NQEQAQQAFE PFMHLLLPEL LVKGCSPLYC CPTDAPAWQQ NVESHNRNSQ 780 LILQKLTERW QCLKFKERVL TMRFRALKEF WRQGQQDLCK RRDFSKAAHR WEPERRNGCG 840 PPSQRTSLRL RPMHTSVGRR EAVSEEAQAM RKMMSEPPVE HLRSTLKMPA MILDEKERMS 900 RRFLNSNALV EDPISLEHER AGINPWSTEE KKCFFEKFAM YNKNFSKIAS HLEHKTTADC 960 VEFYYRNQKS EDFQKLQRRH QLKKRRDYSR SNSSYLATTT PASSRHREAH AARVEALTLA 1020 ASSATAAVTV GTKAVRSTNH HKVLDRGRGG TCSNDFSSLP AQSDSSKCVG SKESKIAACN 1080 LLAVAAGSPL AVSTSCMETP PCTLSSAVTP PTKLCRERTF VKNSVSGGPS IIRGCQLDQQ 1140 TAGQKGIRSL HLRREASKSA AEEMHSQWTD GERQVFTDAV ALFGKDFRSI ALLVRSKSQV 1200 QCRAFFSKSR KRLGLDHLVE QFHATMHARV EAATLSAQNS KHAYLVKPEV AEDVKLLPTA 1260 LVTDCQSQEE KIETKQGGDN ANVIVAGVVK TAKDLSQAGR TKWICEPWKD ASKNLVEELS 1320 DLDLVAAAAE MLVKSAVDIP QTSFGAQEAT NLEPPSTSGL AADSELDRHV PPSCDDVPGT 1380 VDMTEASSIA DAQICQEDEE ETAAAKGDGG SPIGVSPAIE REAAVVDQAA AALVGISAML 1440 LDKQDMKIMN PVTELKPGPF PAGLLANTER TACPSPVVPA TEWTISEVTS TRPATHNSAQ 1500 QTKEKVSRSG TGGEVKPRRE PTSWTQDEKE TFAEILRNHG KDWRLLHESL PSKSLTQIKT 1560 YFQNSKAKLG FPTTEGMGNT GGRGGGTRKR KAEDSDTNSN NAGSGGPLYH QKFSSVSPSE 1620 VDITSHQAKP GMGAPLSMGA KVAMGPAAVG TNNEYATLLG SLSGQPVDQE NLNISDIQKL 1680 IRQIVHANSC PPSSQPGGFS MFQSGVMPGS SFQGNQRVSH LRSQQQLVQP AAQKPSPMGT 1740 HQMQSLTPDI VLQNNQPVLH QAVHQLQQQQ HCAPMAARNQ QQPLQIPALN MVQQQAAHQQ 1800 QQQQLQSPQL VLPSSAVPLQ QQQVGVLQQQ PLQQQQPSLH KQQPHPQEAT SQQQQLQQVV 1860 QQQQCDETQA AIAQVQTFMH FQHQHLQQPS LLHPQSILTA KPHPTTVAQP QILKPQASVS 1920 TQQPGLLHFQ ELPSLAVLRG AQNSTANGTT EVQSHQTGMM ELRGGCNNVS AANNMHQVAH 1980 NEQQQQPGAV QQSPVQPQGP SQRSALPSCD DVQHVGLSDV KLFGKSLLSQ PNLMASGVPS 2040 LSASSNGRVT LQQPAFSNIS IPAASIGTRG ALSKVYGTDS VALPSAFGRV GGPYMASEGR 2100 QAVRPTLTTA QPGNLGLWKR VSNLQPPGPS KGKPEEATSH AMEQPAQVQE AQKFEVEQIT 2160 AAHPHRVRGG HELCRSDGVI TGAQMLDQGK GAAAMAEQYV VGQVNQVDFD TCIEPSQGMA 2220 SGVDQSSLSG WSSSSRGELE FGNSQGSSSM PDKGLPRFVV EALMAIAEWQ SSQSTPSHCS 2280 TGGVQQQLED LQSWQGAFQR DMIGAMTDPV KVSMALELAA SLTGQVQLSA LDMLQQSARE 2340 GGMYTSPQSV FNLPGHAAWS NSGFEQQQQR SVVVPTVTSF HSSNLSRVSG TEEIARTAEL 2400 RDPDSASGGV C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 9e-17 | 882 | 974 | 3 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 9e-17 | 882 | 974 | 3 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 3e-38 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0167s0002.1.p |