PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0166s0024.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 653aa    MW: 69772.1 Da    PI: 4.9668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0166s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-105856251055
                           HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           r RR++iN+++ +L+ l+P+ a      K++ +++Le A++Y+k+Lq
  Sphfalx0166s0024.1.p 585 RHRRNKINERLKTLQHLVPNgA------KVDIVTMLEAAIDYVKYLQ 625
                           89******************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-14574637IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.792575624IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-15580635IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12581630IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-10584629No hitNo description
PfamPF000103.4E-8585625IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MESGSTSAEE TSSSTDLHPL QSNLGDASCM WESWTGHDAS SAAGDELITS TANSAADQAL  60
GCTSSARQLL TFQQQSDILS SPGWFSGFCN PICPPHAASG VMCQNPAAAD PAADDPPCTS  120
SFTSDGQLVQ SAMCNSSPDP DQYCDIAGFE FADHRYVRTA AKHHHPESAH YYSMSPTACD  180
EGLSSESYSN YSRADNKSVY AKPLQVAPLT ALQLLQSIDP DSPSSPLSLY CNSPLPSFGN  240
WDGGAGPHGL PASTWADCSP PTSQPLAGCT TLQLMHHDAD GGQSTDAGNC QYNSTELQQL  300
QASSKRELFP AMTDTSAPAD PYYTIYHPAR PAICDHPSIS SCMIDGAVQF DPALIQRSSG  360
TRGLLCNTEN LLNATRVNCF STPWSPFSHE DIQLDSGNSG RGSMEVLSSA LSEAERRTSG  420
SLCFSQDFQL TQQEERAASS TVGMTTVLAN AVHTSCSGSG ILVADPAPQH LRDLQRPAAA  480
KHRLELVEID CDDVEASPAP RPKRKATYDP SSSATARQRI QNPRAGSQLL EPKSNACNNK  540
ITSSSSSLSF EVSMDMIAVG PALNTNGKPR ARRGSATDPQ SIYARHRRNK INERLKTLQH  600
LVPNGAKVDI VTMLEAAIDY VKYLQDQVKL LKMEQWMSAT PTIYNGVDIS AI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-33bHLH family protein