PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0165s0026.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 319aa MW: 36191.6 Da PI: 8.4231

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0165s0026.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.6	2.1e-15	60	143	2	79
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt e+l+L ++rre+ +r+r+++ ++ +W+++ ++ ++ g+++s++qC++kwe l ++kk++++ek +++s + Sphfalx0165s0026.1.p 60 WTAAEILVLQAGRREDFDRIRKANlkerhkTAQERWKWIEDYGWSNGVHKSAQQCQDKWELLVSEFKKVNDHEKTIPGGQKSYW 143 *******************8643344438999**************************************9855555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.191	52	122	IPR017877	Myb-like domain
Pfam	PF13837	9.2E-11	59	145	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MAELTVGPPS GLGHHHVISA PLGDEREHRN QTGSDIDVPF GDRSKKDAFR KGRSYKKGNW 60 TAAEILVLQA GRREDFDRIR KANLKERHKT AQERWKWIED YGWSNGVHKS AQQCQDKWEL 120 LVSEFKKVND HEKTIPGGQK SYWDMSKEER KKTAMPPNFY KEVYNALAEW YIKGRPADPG 180 ELDTSAPLHH TGASHRSLPT ASDAELSDSE DFDADGDPDV LMRKRKRKSS MFPLSEDMSL 240 ALILKKNNKK VIEAMLESED RKDKRHKEEM EMEEKKLEFE REKFRSTLQL GAGYIGALNS 300 IGDGVKQLGA ALTASSHT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	227	RKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396482.1	1e-180	trihelix transcription factor ASR3-like
Refseq	XP_024396483.1	1e-180	trihelix transcription factor ASR3-like
TrEMBL	A9TNA0	1e-179	A9TNA0_PHYPA; Predicted protein
STRING	PP1S271_34V6.1	1e-180	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-25	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0165s0026.1.p