PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0165s0024.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 332aa    MW: 37503.5 Da    PI: 4.6049
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0165s0024.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.93e-174799456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          ++++t +q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV vW+qNrRa++k
  Sphfalx0165s0024.2.p 47 KRRLTFDQVRSLEQNFELENKLEPERKMQLAKELGLQPRQVAVWYQNRRARWK 99
                          4578999*********************************************9 PP
2HD-ZIP_I/II119.12.4e-3846137293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kkrrl+ +qv++LE++Fe e+kLeperK++la+eLglqprqvavW+qnrRAR+ktkqlE+dye+L + y++lk+e e+  +e+++L++e
  Sphfalx0165s0024.2.p  46 KKRRLTFDQVRSLEQNFELENKLEPERKMQLAKELGLQPRQVAVWYQNRRARWKTKQLERDYEVLSSDYNRLKAEFEAAVQEKQKLKSE 134
                           9**************************************************************************************99 PP

           HD-ZIP_I/II  91 lke 93 
                           +++
  Sphfalx0165s0024.2.p 135 VQR 137
                           975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.55E-1832103IPR009057Homeodomain-like
PROSITE profilePS5007116.32541101IPR001356Homeobox domain
SMARTSM003892.3E-1244105IPR001356Homeobox domain
PfamPF000461.2E-144699IPR001356Homeobox domain
CDDcd000861.24E-1346102No hitNo description
Gene3DG3DSA:1.10.10.606.4E-1948108IPR009057Homeodomain-like
PRINTSPR000311.6E-57281IPR000047Helix-turn-helix motif
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
PRINTSPR000311.6E-58197IPR000047Helix-turn-helix motif
PfamPF021838.2E-15101141IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MLAGGFEDAV FGSGQKRPFY SSFEEPPAEE AGDEDGGDDC PHTVAKKRRL TFDQVRSLEQ  60
NFELENKLEP ERKMQLAKEL GLQPRQVAVW YQNRRARWKT KQLERDYEVL SSDYNRLKAE  120
FEAAVQEKQK LKSEVQRFSG KNELPGCEAV EVSLSESEIT TYTSHEQALV MNSVPIKSER  180
ISKDDQQLVE IRASQWRASS TVDNMSASIP KDHQKELCTS SESNSSEFLE TGSSPRSTID  240
SNKLSVTAAD QQANNNINNC PREVALAESF VDPVLLRPAN DLCGPRALLP PREYQRSAIK  300
LEDGNDHEDQ SCNYFLSQLD DKGCIPWWDW S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-38homeobox 1