PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0165s0024.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 386aa    MW: 42980.8 Da    PI: 4.5997
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0165s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.7e-17101153456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           ++++t +q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV vW+qNrRa++k
  Sphfalx0165s0024.1.p 101 KRRLTFDQVRSLEQNFELENKLEPERKMQLAKELGLQPRQVAVWYQNRRARWK 153
                           4578999*********************************************9 PP
2HD-ZIP_I/II118.73.1e-38100191293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kkrrl+ +qv++LE++Fe e+kLeperK++la+eLglqprqvavW+qnrRAR+ktkqlE+dye+L + y++lk+e e+  +e+++L++e
  Sphfalx0165s0024.1.p 100 KKRRLTFDQVRSLEQNFELENKLEPERKMQLAKELGLQPRQVAVWYQNRRARWKTKQLERDYEVLSSDYNRLKAEFEAAVQEKQKLKSE 188
                           9**************************************************************************************99 PP

           HD-ZIP_I/II  91 lke 93 
                           +++
  Sphfalx0165s0024.1.p 189 VQR 191
                           975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.01E-1887157IPR009057Homeodomain-like
PROSITE profilePS5007116.32595155IPR001356Homeobox domain
SMARTSM003892.3E-1298159IPR001356Homeobox domain
PfamPF000461.5E-14100153IPR001356Homeobox domain
CDDcd000864.51E-14100156No hitNo description
Gene3DG3DSA:1.10.10.601.2E-18102162IPR009057Homeodomain-like
PRINTSPR000312.0E-5126135IPR000047Helix-turn-helix motif
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PRINTSPR000312.0E-5135151IPR000047Helix-turn-helix motif
PfamPF021831.0E-14155195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MPLGPTTTSE VGAEMAATSM RDLGSQSLML LRKETSCPAN SLVGAMLAPC SNIGLQAGGF  60
EDAVFGSGQK RPFYSSFEEP PAEEAGDEDG GDDCPHTVAK KRRLTFDQVR SLEQNFELEN  120
KLEPERKMQL AKELGLQPRQ VAVWYQNRRA RWKTKQLERD YEVLSSDYNR LKAEFEAAVQ  180
EKQKLKSEVQ RFSGKNELPG CEAVEVSLSE SEITTYTSHE QALVMNSVPI KSERISKDDQ  240
QLVEIRASQW RASSTVDNMS ASIPKDHQKE LCTSSESNSS EFLETGSSPR STIDSNKLSV  300
TAADQQANNN INNCPREVAL AESFVDPVLL RPANDLCGPR ALLPPREYQR SAIKLEDGND  360
HEDQSCNYFL SQLDDKGCIP WWDWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-38homeobox 1