PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0163s0012.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 773aa MW: 81566.5 Da PI: 4.8109

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0163s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.5e-09	577	624	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq Sphfalx0163s0012.1.p 577 SHSLAERVRREKISERMKYLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 624 8***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.46E-17	571	642	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.96E-10	571	628	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.8E-17	573	640	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.675	573	623	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-6	577	624	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-10	579	629	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MAYIATAPVL EPSFSGQLQC SLSRDTVPAS TYSDKFLVDS RSLQASSDPL TPGSHAAACC 60 TTNAPASSST FYPSGWQAMQ LNVAENVFQK GPAVAVPSSG GTSANELLVL APSEISVNNN 120 GSPSSSSQLP VGSTRSSCSG SPELLGSTMM SGDSWQLQLL DSNNAFRSSL NSLSASSSLV 180 LDSNMSGHAS GLGAANSLMT GGWRGAGHSL DTMAMSLNTL RTWSSREQEP CGLSTLEPTT 240 GPLALQGVGL PTSHCLEQIS SDPAFAERAA KYSPFNNGGE YSQPLPFVTS DPGKSRAHVA 300 GCTLRTQPES ESKMSRSTSS TRSPAASSAA RLNLAVSILQ KLETANDPLD TLEAALNQQR 360 GAQDPPVVEE LATAAADHEE LVIQEPEVAC HVVKEQIVAV DGGATDRDNM GLKEGEEAIS 420 QEDVSGVIQA AACRESNDEY TGNKRKETHS DASKESNTAR YFTETKVDHE SCGDQDPRAA 480 KRYKAGCAAA DGKGRLLECF PPEDGLVMKS LDKQTERSSS ESNSGDSSSP SAGAAAAAAG 540 NMRMKENVKT LSGSTEPAAS KQDYVHVRAR RGQATDSHSL AERVRREKIS ERMKYLQELV 600 PGCSKVTGKA VMLDEIINYV QSLQQQVEFL SMKLAAVNPQ LDFNLDSNLK KEILQSGVSS 660 VLGSELTSTF GLHQPLLTSR LAAAAPDFQS PLGTMDSHLC RTISAPTSIP FVPNLDAYGD 720 DDATQMSIGW DREMQSMLHM GFGQTGQATS SSLLEGFNNC QFGAAGHMKV EL*

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MAYIATAPVL EPSFSGQLQC SLSRDTVPAS TYSDKFLVDS RSLQASSDPL TPGSHAAACC  60
TTNAPASSST FYPSGWQAMQ LNVAENVFQK GPAVAVPSSG GTSANELLVL APSEISVNNN  120
GSPSSSSQLP VGSTRSSCSG SPELLGSTMM SGDSWQLQLL DSNNAFRSSL NSLSASSSLV  180
LDSNMSGHAS GLGAANSLMT GGWRGAGHSL DTMAMSLNTL RTWSSREQEP CGLSTLEPTT  240
GPLALQGVGL PTSHCLEQIS SDPAFAERAA KYSPFNNGGE YSQPLPFVTS DPGKSRAHVA  300
GCTLRTQPES ESKMSRSTSS TRSPAASSAA RLNLAVSILQ KLETANDPLD TLEAALNQQR  360
GAQDPPVVEE LATAAADHEE LVIQEPEVAC HVVKEQIVAV DGGATDRDNM GLKEGEEAIS  420
QEDVSGVIQA AACRESNDEY TGNKRKETHS DASKESNTAR YFTETKVDHE SCGDQDPRAA  480
KRYKAGCAAA DGKGRLLECF PPEDGLVMKS LDKQTERSSS ESNSGDSSSP SAGAAAAAAG  540
NMRMKENVKT LSGSTEPAAS KQDYVHVRAR RGQATDSHSL AERVRREKIS ERMKYLQELV  600
PGCSKVTGKA VMLDEIINYV QSLQQQVEFL SMKLAAVNPQ LDFNLDSNLK KEILQSGVSS  660
VLGSELTSTF GLHQPLLTSR LAAAAPDFQS PLGTMDSHLC RTISAPTSIP FVPNLDAYGD  720
DDATQMSIGW DREMQSMLHM GFGQTGQATS SSLLEGFNNC QFGAAGHMKV EL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	1e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0163s0012.1.p