PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0162s0018.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 830aa    MW: 84680.5 Da    PI: 8.8657
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0162s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-0593115123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C+k F r  nL+ H r H
  Sphfalx0162s0018.1.p  93 FVCEICNKGFQRDQNLQLHRRGH 115
                           89******************988 PP
2zf-C2H211.90.00067169191123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H +t+
  Sphfalx0162s0018.1.p 169 WKCDKCSKRYAVQSDWKAHSKTC 191
                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.59E-792115No hitNo description
Gene3DG3DSA:3.30.160.603.0E-592115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01793115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94993115IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM00355220134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.59E-7164189No hitNo description
SMARTSM00355140169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MTLSNITSAS AGEASVSSGS HTDHEYDGND TSTPPPPRSM ASTLATTVSS GQQQQPPLAA  60
AGSKRKRNLP GTPDPEAEVI ALSPTTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK  120
LRQRTSKEIR KRVYICPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV  180
QSDWKAHSKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEDSARVSAA GKRIGSGSDM  240
SSSDMVVQVI GPAAASTMSV IGGGGAAAAA PSSPHTNNLG AAAVSGGDHN TLAASAGAGG  300
GGLGGSPMRS GFLPPSMAAS LGRLDEGGLS LLPPQWGSHQ AVVGNAPAAT TAGAAGPRLS  360
LWLGGPAGGP GQGLPGSQQM QLQQLPGCSD IASSYLMQPP KAIMHLGGGG GTGLQGIPNH  420
ALQEYDVPQA PRPLSSSGLL LPMVSSGSTT GSLFAHLFSS AGTSMPGFHA TSAASMGMGI  480
SGFSDFMTGV NQTERSSATA GLSLSSAAGL SSCSSSVYND GVGNVPSMSM LFNQQQLQHH  540
HTATAQMSAT ALLQKAAQMG ATASNSSSML RGFGFGGGDS SSMSLWQGQR QEPAQVGDQL  600
PPPSKPSIVQ PLQSRRSVEV QPMQTGSPVV VGTSMGPSSF GGSQGRPSEH HAAARIQDFR  660
NSLSGGAGIF AGSLSNMSSM FGPNATPSTS DVGGMMPPSN NRHRMSTNDV MGGHHHHSPY  720
SGAPVSQGMG PSLLPVGLGG GGSTRAEDGS DRFTHDFLGV GGANGMAAAA VAAAAAAAGG  780
MGRTLSQCDL ASITSLGPGV DLGAFFTQRE NLRSVGASGH SPGKSWDSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35165229367Zinc finger protein JACKDAW
5b3h_F1e-35165229367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365599.10.0protein indeterminate-domain 1-like isoform X1
TrEMBLA0A2K1L2D80.0A0A2K1L2D8_PHYPA; Uncharacterized protein
STRINGPP1S165_3V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-111C2H2 family protein