PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0160s0022.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 522aa MW: 58938.9 Da PI: 6.2019

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0160s0022.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	370	389	3	22
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg sF + + +H+r+ Sphfalx0160s0022.1.p 370 CSTCGPSFEDMAKYSSHLRK 389 ******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02992	1.8E-56	212	412	IPR004242	Transposon, En/Spm-like
PROSITE profile	PS50157	8.663	368	400	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MLPRRLRATY QEMGMPDKSD SSSTHSSSND LFAPDEGVSQ PVQEAPLLAN QEQAMDDFMV 60 DWFGLDIVDD MSGNPHDEGA NADDPRHQHT AQAQRQWQEA KAHAQTPIFQ GARLSRLAAI 120 LGLLNIQAKH KASNTMLSDI FQFCHSLLLP EENVLPGSWK EAKKILSSIG MEYQIVHACV 180 NDCMLFHGNN AHLTECNTCE EARYDPQMLT EKEHRSEPGV MRLPVDSPAH KHVESTWPEF 240 KRDPRHVRLG LASDGVNPHS LGGKGRPTSV WPVVVMNYNL PPWLSMKKGF LLLSLIIPGP 300 SKVKNLDTYL ALVVDELKTF WDGVWAYDGR KTTGGIPRVF KLRAICMWTM HDYPGFGFVS 360 GLQTQGYKAC STCGPSFEDM AKYSSHLRKI VYLGHTKFLP LGHDMRSDPL LFSSFDMPYG 420 DERDIPEATT FAYWKDVANR VIDLNDSMVF EGSGLTRWGI LNNLPYWGEL KIRHLLDPMH 480 IEGNVGKAII KQLYGEKDSN FREACEDFER HPDVWITVDP NT

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MLPRRLRATY QEMGMPDKSD SSSTHSSSND LFAPDEGVSQ PVQEAPLLAN QEQAMDDFMV  60
DWFGLDIVDD MSGNPHDEGA NADDPRHQHT AQAQRQWQEA KAHAQTPIFQ GARLSRLAAI  120
LGLLNIQAKH KASNTMLSDI FQFCHSLLLP EENVLPGSWK EAKKILSSIG MEYQIVHACV  180
NDCMLFHGNN AHLTECNTCE EARYDPQMLT EKEHRSEPGV MRLPVDSPAH KHVESTWPEF  240
KRDPRHVRLG LASDGVNPHS LGGKGRPTSV WPVVVMNYNL PPWLSMKKGF LLLSLIIPGP  300
SKVKNLDTYL ALVVDELKTF WDGVWAYDGR KTTGGIPRVF KLRAICMWTM HDYPGFGFVS  360
GLQTQGYKAC STCGPSFEDM AKYSSHLRKI VYLGHTKFLP LGHDMRSDPL LFSSFDMPYG  420
DERDIPEATT FAYWKDVANR VIDLNDSMVF EGSGLTRWGI LNNLPYWGEL KIRHLLDPMH  480
IEGNVGKAII KQLYGEKDSN FREACEDFER HPDVWITVDP NT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	Sphfalx0160s0022.1.p