PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0158s0012.8.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NF-YC
Protein Properties Length: 213aa    MW: 24323 Da    PI: 6.2269
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0158s0012.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.42.5e-54451491102
                 NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                           ql++fw++q   ie++++f+nh+lPlarikki+k+dedvkmi+aeaPvl++kace+fileltlrsw+h+eenkrrtl+++dia a+tr 
  Sphfalx0158s0012.8.p  45 QLQTFWQQQmqeIEQVNEFRNHQLPLARIKKIMKSDEDVKMIAAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRG 133
                           89*****9987889*************************************************************************** PP

                 NF-YC  87 difdflvdivprdelk 102
                           difdflvdivprdelk
  Sphfalx0158s0012.8.p 134 DIFDFLVDIVPRDELK 149
                           *************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.37E-3329139IPR009072Histone-fold
PfamPF008081.8E-2167130IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-3668145IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAAHQMPTTA PGMPHPSAVI PPQYAHSQPQ QMQPQLHYQH LQKQQLQTFW QQQMQEIEQV  60
NEFRNHQLPL ARIKKIMKSD EDVKMIAAEA PVLFAKACEM FILELTLRSW IHTEENKRRT  120
LQRNDIAGAI TRGDIFDFLV DIVPRDELKD EDLAVPWTGV PGEPVPYGNM YYPPVAGQPM  180
HHAMPPEMMV GQPALAQNPQ MMYQPPQQGN MQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-5353145395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123RRTLQRN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369382.12e-97nuclear transcription factor Y subunit C-2-like
SwissprotQ9SMP01e-68NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A2K1IBU62e-93A0A2K1IBU6_PHYPA; Uncharacterized protein
STRINGPP1S315_9V6.39e-97(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.19e-65nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  3. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]