PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0158s0012.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 213aa MW: 24323 Da PI: 6.2269 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 173.4 | 2.5e-54 | 45 | 149 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ql++fw++q ie++++f+nh+lPlarikki+k+dedvkmi+aeaPvl++kace+fileltlrsw+h+eenkrrtl+++dia a+tr Sphfalx0158s0012.4.p 45 QLQTFWQQQmqeIEQVNEFRNHQLPLARIKKIMKSDEDVKMIAAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRG 133 89*****9987889*************************************************************************** PP NF-YC 87 difdflvdivprdelk 102 difdflvdivprdelk Sphfalx0158s0012.4.p 134 DIFDFLVDIVPRDELK 149 *************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.37E-33 | 29 | 139 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-21 | 67 | 130 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-36 | 68 | 145 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MAAHQMPTTA PGMPHPSAVI PPQYAHSQPQ QMQPQLHYQH LQKQQLQTFW QQQMQEIEQV 60 NEFRNHQLPL ARIKKIMKSD EDVKMIAAEA PVLFAKACEM FILELTLRSW IHTEENKRRT 120 LQRNDIAGAI TRGDIFDFLV DIVPRDELKD EDLAVPWTGV PGEPVPYGNM YYPPVAGQPM 180 HHAMPPEMMV GQPALAQNPQ MMYQPPQQGN MQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-53 | 53 | 145 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 117 | 123 | RRTLQRN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369382.1 | 2e-97 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9SMP0 | 1e-68 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2K1IBU6 | 2e-93 | A0A2K1IBU6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S315_9V6.3 | 9e-97 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48590.1 | 9e-65 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0158s0012.4.p |
Publications ? help Back to Top | |||
---|---|---|---|
|