PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0157s0023.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GATA
Protein Properties Length: 573aa    MW: 62515.8 Da    PI: 4.743
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0157s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.52.2e-141347135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C +Cg  +TplWR+gp  ++ LCnaCG ++r kg+
  Sphfalx0157s0023.1.p 13 CGHCGIETTPLWRNGPPEKPVLCNACGSRWRTKGT 47
                          9***************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.0E-8759IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-10849No hitNo description
CDDcd002022.12E-141261No hitNo description
PfamPF003202.8E-121347IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401338IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-111347IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.5941346IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MSPPRRRGKQ GPCGHCGIET TPLWRNGPPE KPVLCNACGS RWRTKGTLLN YMPMHSGGFG  60
GAGSKEGVAR RKKGSHKRSS DPACSHKRKE PSGGHVEIRT PASLHPLLLK DAEEELKTTS  120
SLESGVFGPD SDALSRSSPV QSDSSAGLGW EGPIPSRKRT PMVRGCTSLE KLISHFQELM  180
NESPPQSCPT ATSSESAEEL LLEGTPSIMT VEKGVDIEFI QQNPMPLLQE PAVEVMSFLM  240
ESAVNVEAMQ GMDARFSNGV VVEPLNEAPI FPAQGKEKPS HFLKEMEDMG YLQSDHRLVP  300
NKALLENFPC NKQDVLQGCQ SPLVFLEMKE ILSFDTYTGL LTDQEQGQLA SLVSPVDINR  360
IPESLKEMFN SGQFEGALVN FQQLLSEGMF DSLEPGMDAG VLEHLQQLLT ASDLNSSGWM  420
ERLSQLQIYN KHWGGSSDLS KNKELIKDKM NGCRVPLIFG SGSIKNSLDN AVSMDDLPDL  480
QVPGSDGMEP DLLFDLSSNI LSFHEAEVLQ QPVWTKSKEE SESNQIESGG LIMSNIWHMD  540
NSLSELFWNP LCASPGNGLP NGAVLNPGQM LI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
139PRRRGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.11e-27GATA transcription factor 26