PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0157s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 21321 Da PI: 8.4773 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.7 | 1.7e-42 | 23 | 123 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da+sslvyeA+ar+rdPvyG++g i++lqqq ++ Sphfalx0157s0004.1.p 23 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKIFGASNVSKMLMEVPESQRADAASSLVYEANARIRDPVYGCMGAISALQQQAQS 111 7**************************************************************************************** PP DUF260 90 lkaelallkeel 101 l+ael+++++e+ Sphfalx0157s0004.1.p 112 LQAELNAVRQEI 123 ********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.737 | 22 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-42 | 23 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MSSSPLDRRA MPGSQGQGNS STPCAACKLL RRRCAQECPF SPYFSPHEPQ KFASVHKIFG 60 ASNVSKMLME VPESQRADAA SSLVYEANAR IRDPVYGCMG AISALQQQAQ SLQAELNAVR 120 QEIMRYRRHD NAVAEATAAT AAMMVGGYQG HNLQDRGVVA HPLSTQTTAS EVYTVPSSNN 180 VATPDLKERS YWSPLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-48 | 10 | 126 | 1 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-48 | 10 | 126 | 1 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024362454.1 | 4e-78 | LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 8e-63 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2R6WX81 | 1e-90 | A0A2R6WX81_MARPO; Uncharacterized protein | ||||
STRING | PP1S156_26V6.1 | 2e-77 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 8e-63 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0157s0004.1.p |
Publications ? help Back to Top | |||
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