PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0154s0010.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 522aa    MW: 56099.6 Da    PI: 6.9704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0154s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08110159154
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r++ +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+iL   v+ +k+L
  Sphfalx0154s0010.1.p 110 RKVHKADREKLRRDRLNEQFGELAGVLDPD----RPKNDKATILGDSVQVVKEL 159
                           5677889*******************9997....79*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-11107172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.551109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-10109181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-7110164No hitNo description
SMARTSM003532.5E-6115165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MASSTNSWLQ TNLLSQHDSQ QQNSSHALYH SSEISLHGAS SAHLNQSQHL ELGHGSHGME  60
PYCQPLHHTL NAGLHLSGDS QQPVQPSNTF PGSSGRGAAS NEIGDPTSAR KVHKADREKL  120
RRDRLNEQFG ELAGVLDPDR PKNDKATILG DSVQVVKELR AEVKRLKCEH TSLLDESRDL  180
VQEKTELREE KAALKTETEQ LQAQLEQRLR GMLPWMSVDP STVMMGSGPY PFPMPVAQPL  240
TGPMSGPLPP TSETQQLPQQ PVVAPSTYLS MAPPVAFMHP GMQAYAMYGT RHSETGGPFM  300
PYAHYPGVGN HSHVERPYAQ YPSTVQPMPS YLVQMQPPQE GVAVSPPDIP MYRPPTFAVP  360
VVMAGQSRSH PHAPFPQYPG VVMSQSYASH ASSRPTATSP EPQGVETSLQ LQTPGGPSPS  420
PSLAPTPSQR KVTAGIARAQ SSGSESSASV LKSESNGATQ IDCSSGAGDA ISTLTLASSS  480
LSRPVDATHA EGMRGSGHRS RIQSKNSVMM DARNWHPFTI D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388553.11e-127SH3 domain-containing protein C23A1.17-like isoform X1
RefseqXP_024388554.11e-127SH3 domain-containing protein C23A1.17-like isoform X1
RefseqXP_024388555.11e-127SH3 domain-containing protein C23A1.17-like isoform X1
RefseqXP_024388557.11e-127SH3 domain-containing protein C23A1.17-like isoform X1
TrEMBLA9RVD91e-125A9RVD9_PHYPA; Predicted protein
STRINGPP1S31_147V6.11e-126(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.25e-36bHLH family protein