PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0154s0004.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 278aa    MW: 31306.3 Da    PI: 7.736
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0154s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.64.3e-1522124185
              trihelix   1 rWtkqevlaLiearr.emeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                           rWtk+e+l+L++a++ e+e++l  g                    ++  +W  v +++++ g+ r + qC+++w +l k+y+kik++e+
  Sphfalx0154s0004.1.p  22 RWTKHETLTLVAAKKrEIEKTLDHGTatttavqgidssitaaaaaAADVKWVTVFQYCKQFGVDRDASQCRKRWHSLYKEYRKIKDHEN 110
                           8************87555555655544455666666677777777999****************************************9 PP

              trihelix  70 krtsessstcpyfdql 85 
                               ++ s +++  +l
  Sphfalx0154s0004.1.p 111 TY--GTGSYWSMSAEL 124
                           74..566677776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-1022122No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKGVGGDSQK VEAIDKGHRG LRWTKHETLT LVAAKKREIE KTLDHGTATT TAVQGIDSSI  60
TAAAAAAADV KWVTVFQYCK QFGVDRDASQ CRKRWHSLYK EYRKIKDHEN TYGTGSYWSM  120
SAELRRENKL AASFEHDVFE AFEIYCQRMP PLVAPKHTFN SVVVSSDHKR KSSNLLPDVV  180
LQEGVADLED LQTENGDGGD DDEAGIYHHP MGKRKKKRQR ESVEEQLIAV LEKSSQDLQQ  240
HLSLDRELRK EQARGLVEVL NKLVDVIGTM AEAMQRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219KKKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-29Trihelix family protein