PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0153s0039.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ARF
Protein Properties Length: 765aa    MW: 84015.1 Da    PI: 7.8772
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0153s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.79.3e-23138239199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD +vF
  Sphfalx0153s0039.1.p 138 FAKTLTQSDANNGGGFSVPRYCAETIfppldytADPPVQ--TVLAKDVHGDVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDAIVF 224
                           89****************************997556555..8999******************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              ++ ++el+v+v+r+
  Sphfalx0153s0039.1.p 225 L--RSASGELCVGVRRS 239
                           *..4479999****985 PP

2Auxin_resp103.62.5e-34320403183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                           aa+ a  ++ FevvY+Prast+eF+vk++ v++al++++ +GmRfkmafetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+
  Sphfalx0153s0039.1.p 320 AATLAVAGKQFEVVYYPRASTAEFCVKAALVKQALDHNWYAGMRFKMAFETEDSSRISWfMGTISAVQPADPLLWPKSPWRVLQ 403
                           577788899*************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-37129250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-30131252IPR015300DNA-binding pseudobarrel domain
CDDcd100178.69E-21137238No hitNo description
PfamPF023621.3E-20138239IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562138240IPR003340B3 DNA binding domain
SMARTSM010192.8E-20138240IPR003340B3 DNA binding domain
PfamPF065071.4E-30320403IPR010525Auxin response factor
PROSITE profilePS5174511.84678758IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MPGFGPEVTM NVKAENLDDS GGRDRRTGVV EGMGSLDPQL WHACAGGMVQ LPPPTAKVIY  60
FPQGHAEQAA TTPEFPRSLG PYGTVLCQVV SVKFMADTET DEVFARLRLQ PEPVSSMYMN  120
DRLEDVPPSP PHKKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPPLDYT ADPPVQTVLA  180
KDVHGDVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD AIVFLRSASG ELCVGVRRSM  240
RGTTGSDSSA WHSSTIATSS VPVRPSRWEV KGTESFSDYL DAGPGVSNTS IRPGIANASS  300
STSSFARNRA RVTAKSVLEA ATLAVAGKQF EVVYYPRAST AEFCVKAALV KQALDHNWYA  360
GMRFKMAFET EDSSRISWFM GTISAVQPAD PLLWPKSPWR VLQVTWDEPD LLQGVGRASP  420
WQVELVATLP MQLPPFPLPK KKPRPALPSE LLHLQAPGLL SGLPTNNFVS GQLPPLTEDA  480
SAGMQGARHD RIYGLLVSDF PTSYKHSRDF IPDTNFFHAE HDPPARTSLL PDPKIFSSLP  540
EHLSLPAAEL QSERSATTNK TGPRSFFLFG QSINPAQSSK PQLQLPPASN SSDGLLLPTA  600
TGNWLLQNKQ EDSKDCIKQF TSVPNGRSMG TEGRLMLYEL NGSRYKADQL GENLIGNLEW  660
LREPVSAQGK DQISGDVTFL CKVFRESEEV GRTLDLSKLA TYEELYERLA AMFSIPKAHL  720
HDRVVYKADG FTKGIGQEPY RNFATSVRRI TILSERERSF DTLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-723542418353Auxin response factor 1
4ldw_A2e-723542418353Auxin response factor 1
4ldw_B2e-723542418353Auxin response factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372940.10.0auxin response factor 10-like isoform X1
RefseqXP_024372941.10.0auxin response factor 10-like isoform X1
TrEMBLA0A2K1KN890.0A0A2K1KN89_PHYPA; Auxin response factor
STRINGPP1S339_47V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-160auxin response factor 16