PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0153s0039.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 765aa MW: 84015.1 Da PI: 7.8772 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.7 | 9.3e-23 | 138 | 239 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD +vF Sphfalx0153s0039.1.p 138 FAKTLTQSDANNGGGFSVPRYCAETIfppldytADPPVQ--TVLAKDVHGDVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDAIVF 224 89****************************997556555..8999******************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++ ++el+v+v+r+ Sphfalx0153s0039.1.p 225 L--RSASGELCVGVRRS 239 *..4479999****985 PP | |||||||
2 | Auxin_resp | 103.6 | 2.5e-34 | 320 | 403 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++ FevvY+Prast+eF+vk++ v++al++++ +GmRfkmafetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+ Sphfalx0153s0039.1.p 320 AATLAVAGKQFEVVYYPRASTAEFCVKAALVKQALDHNWYAGMRFKMAFETEDSSRISWfMGTISAVQPADPLLWPKSPWRVLQ 403 577788899*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-37 | 129 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-30 | 131 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.69E-21 | 137 | 238 | No hit | No description |
Pfam | PF02362 | 1.3E-20 | 138 | 239 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.562 | 138 | 240 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-20 | 138 | 240 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-30 | 320 | 403 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 11.84 | 678 | 758 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 765 aa Download sequence Send to blast |
MPGFGPEVTM NVKAENLDDS GGRDRRTGVV EGMGSLDPQL WHACAGGMVQ LPPPTAKVIY 60 FPQGHAEQAA TTPEFPRSLG PYGTVLCQVV SVKFMADTET DEVFARLRLQ PEPVSSMYMN 120 DRLEDVPPSP PHKKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPPLDYT ADPPVQTVLA 180 KDVHGDVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD AIVFLRSASG ELCVGVRRSM 240 RGTTGSDSSA WHSSTIATSS VPVRPSRWEV KGTESFSDYL DAGPGVSNTS IRPGIANASS 300 STSSFARNRA RVTAKSVLEA ATLAVAGKQF EVVYYPRAST AEFCVKAALV KQALDHNWYA 360 GMRFKMAFET EDSSRISWFM GTISAVQPAD PLLWPKSPWR VLQVTWDEPD LLQGVGRASP 420 WQVELVATLP MQLPPFPLPK KKPRPALPSE LLHLQAPGLL SGLPTNNFVS GQLPPLTEDA 480 SAGMQGARHD RIYGLLVSDF PTSYKHSRDF IPDTNFFHAE HDPPARTSLL PDPKIFSSLP 540 EHLSLPAAEL QSERSATTNK TGPRSFFLFG QSINPAQSSK PQLQLPPASN SSDGLLLPTA 600 TGNWLLQNKQ EDSKDCIKQF TSVPNGRSMG TEGRLMLYEL NGSRYKADQL GENLIGNLEW 660 LREPVSAQGK DQISGDVTFL CKVFRESEEV GRTLDLSKLA TYEELYERLA AMFSIPKAHL 720 HDRVVYKADG FTKGIGQEPY RNFATSVRRI TILSERERSF DTLS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 2e-72 | 35 | 424 | 18 | 353 | Auxin response factor 1 |
4ldw_A | 2e-72 | 35 | 424 | 18 | 353 | Auxin response factor 1 |
4ldw_B | 2e-72 | 35 | 424 | 18 | 353 | Auxin response factor 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372940.1 | 0.0 | auxin response factor 10-like isoform X1 | ||||
Refseq | XP_024372941.1 | 0.0 | auxin response factor 10-like isoform X1 | ||||
TrEMBL | A0A2K1KN89 | 0.0 | A0A2K1KN89_PHYPA; Auxin response factor | ||||
STRING | PP1S339_47V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-160 | auxin response factor 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0153s0039.1.p |