PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0149s0004.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 645aa MW: 69146.4 Da PI: 6.5101

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0149s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	487	534	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Sphfalx0149s0004.1.p 487 SHSIAERVRREKISERMKYLQELVPGC----NKVTGKAVMLDEIINYVQSLQ 534 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-16	481	547	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.26E-9	481	538	No hit	No description
PROSITE profile	PS50888	15.51	483	533	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-16	485	548	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-6	487	534	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-9	489	539	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MDGDIHGSGA AKVESLHSSL HNSSNQPNNI RGAAFQQDPA GRSVSPELLI RSSFGMQVGG 60 GNWSQTATNS NNVMHFATSM ASTNIPVFGS CPALLQARQV PQAAGSTFKI LQPEISATRV 120 GGNLHGLNNC VPSPQLMNGS TSYAADDQPL GPRLMTRGNS WSALDVLNTA MGSALSSSSQ 180 CLARSFSSSP GFGEPPAAKF SSLGFNGNLY SQTQYSLPSS DGVGGIRSIM GGDNDGTTIS 240 RSFSCSRLAN LAASSNITDV RISQYSALAE SKSSCEIEAT TMEQEARSKS AAMQYDDKKL 300 QTRRISGDPI TSMVKAFQGA TETGGGPRHN TTDEPDGSLE HSSCAEQAHG RTLQRLDCIG 360 KRKLLQADDE EADCREPSMA NSVAPSARRD NGSQLAAAVG PAADGDETKF AVKRRRSGVE 420 IITKEDAKFQ SVDRTLNSET SYSAGESLSS LVLMKERCTV TKLSERTSLM QQDYIHVRAR 480 RGEATDSHSI AERVRREKIS ERMKYLQELV PGCNKVTGKA VMLDEIINYV QSLQLQVEFL 540 SMKLAAVNLS RLDFDVDKSL AKELLCASMA PSMLPMGPDP MAMSYGHQQQ LLQQRQVHNL 600 QSVGFSDLDQ FRALDSAFEA SLPRTMTTAV CTPLSCLDAF ADNL*

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MDGDIHGSGA AKVESLHSSL HNSSNQPNNI RGAAFQQDPA GRSVSPELLI RSSFGMQVGG  60
GNWSQTATNS NNVMHFATSM ASTNIPVFGS CPALLQARQV PQAAGSTFKI LQPEISATRV  120
GGNLHGLNNC VPSPQLMNGS TSYAADDQPL GPRLMTRGNS WSALDVLNTA MGSALSSSSQ  180
CLARSFSSSP GFGEPPAAKF SSLGFNGNLY SQTQYSLPSS DGVGGIRSIM GGDNDGTTIS  240
RSFSCSRLAN LAASSNITDV RISQYSALAE SKSSCEIEAT TMEQEARSKS AAMQYDDKKL  300
QTRRISGDPI TSMVKAFQGA TETGGGPRHN TTDEPDGSLE HSSCAEQAHG RTLQRLDCIG  360
KRKLLQADDE EADCREPSMA NSVAPSARRD NGSQLAAAVG PAADGDETKF AVKRRRSGVE  420
IITKEDAKFQ SVDRTLNSET SYSAGESLSS LVLMKERCTV TKLSERTSLM QQDYIHVRAR  480
RGEATDSHSI AERVRREKIS ERMKYLQELV PGCNKVTGKA VMLDEIINYV QSLQLQVEFL  540
SMKLAAVNLS RLDFDVDKSL AKELLCASMA PSMLPMGPDP MAMSYGHQQQ LLQQRQVHNL  600
QSVGFSDLDQ FRALDSAFEA SLPRTMTTAV CTPLSCLDAF ADNL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	1e-45	cryptochrome-interacting basic-helix-loop-helix 1

Link Out ? help Back to Top
Phytozome	Sphfalx0149s0004.1.p