PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0146s0044.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HB-other

Protein Properties

Length: 1800aa MW: 200266 Da PI: 4.6232

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0146s0044.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.1e-18	18	72	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ryp ++ r+eL+++l+L+++q ++WF+ rR k++k Sphfalx0146s0044.1.p 18 KRRMKTPVQLEALERVYAEDRYPVESVRAELSAQLNLSDKQLQMWFCHRRLKDRK 72 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.24E-14	12	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.516	13	73	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.0E-16	14	78	IPR009057	Homeodomain-like
SMART	SM00389	1.4E-15	16	77	IPR001356	Homeobox domain
CDD	cd00086	2.45E-13	18	74	No hit	No description
Pfam	PF00046	1.1E-15	18	72	IPR001356	Homeobox domain
SMART	SM00571	2.1E-16	491	550	IPR018501	DDT domain
PROSITE profile	PS50827	14.783	491	550	IPR018501	DDT domain
Pfam	PF02791	1.6E-14	493	547	IPR018501	DDT domain
Pfam	PF05066	1.3E-13	673	740	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	4.3E-7	886	916	IPR028942	WHIM1 domain
Pfam	PF15613	1.6E-14	1063	1135	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1800 aa Download sequence Send to blast
MMASEERMRL SPEETNFKRR MKTPVQLEAL ERVYAEDRYP VESVRAELSA QLNLSDKQLQ 60 MWFCHRRLKD RKGKDEASST PSVSRKKAKV DNSTVLQYPQ AVLASDTGDA VLLSGDHYGQ 120 QYLYEGLQHF TPEEPKARSK RSVPRELEFL GKQRSQELAV RVAVEAQLGE PLREDGPPLG 180 TEFDPLPVGA FSIKGDVLGD PRQFIGQDQS AHGDKHYDYA QEMKLKGSLP SLALGLPPPL 240 PNPRGSKRKS MAPPAPLPVQ FEPRPLCEYQ FLPEQPVRLE ESQFYERATK QLNLFPGPER 300 SYEILAASRM EEARLQKEVE AQEKRIQKEL EKQEALRRKR DEQMRKEQEK MEREIRKEEE 360 RVMRERMKEQ ERIERENKKE AERQEKLQQK ELKRMEKLRH KEEARKEKEA ARIKAANERA 420 LAKRLAKDVT DLIDDEQLEL MEAATAAAAL NHDYLDGDGT LDASQILLRP FPPATVKMKP 480 LLSVYPWTDS DQNVGNLLMV WRFLTTFADV VGLWPFTIDE LVQGFHDYDS RLLADIHVAL 540 VKTMVKDIVD AAQAVAGGTV GQRDAIAMAA GGHPQLVESA YAWGFDIREW GKHVNGLTWP 600 EILRQFALAA GFGPKWKKQN MTSNVSKDEQ EKDKREDTVA NLRSGAAAAN AVALMQGKGI 660 GTSRRSQFCL TPGTVKFAAF HVLSLEGDKG LSIGEVVKRI KTLGLRDLSS SKTPEASVSA 720 VLSRDSNLFE RIAPSTYTVR PAFRKDPEDA DAILSTARER IRQYQIGLLD GKGVEKEGDD 780 ADTEYGSEGQ DVEDMEDMEK EEDEEDEEPG SSKRVKANGR GQRLLTQDGT SGDSESPVAD 840 GNGAVEIEAF EDIVKEDEEE DGGKEGLQGA KPCEQPEDET ELDESQEVEL WVQGLVEGEY 900 ADLSVEERLN ALVALVTTVN QGNAIRVALE ERLEAATALK RQMWAEMQLE KRRLKEEQNS 960 RAHVVPAGPR LEGESPEMLA ENPGAGASTV DPKSVGTIDV NLSNHHVRTQ GDSFAVNGRP 1020 CNGMTSLQSS HEAGSSMAHL SEKSRAQTKV DIGLRAEELY VFRSLPLGCD RRHNRYWQFV 1080 TGNGGQDPGC GRLFFESNSD GCWSVIDNEE DLDALMTSLD PRGAREAALA AILHRLEGTL 1140 RRAMQSKALA DAQQLSRLSS TVTCPFPYGE RGSGWKGLEG SPVSGISGLE SDPVETNAAI 1200 SVELGRTGSE KRRALERYMD VEKWFWSECF NGETATKATK SGLKRDTDLL VSCNVCHDCY 1260 WPQDKHCRCC HATFESSSPR AHSRFLDHNY ECEEKKRRGD PNWKLNGSLA SMPSRLQLLK 1320 AQLLTIELAI PAEALNERWT ERQRKLWAGS LKSASGPSEL LQVLMTLESV VERDWLASTY 1380 ETMEEILEVM GSASCAEGQG AVPHWVPLTT AAVAFRISLF DDALAYDEEA KKDREKQEEE 1440 DEIKEKSQAM HTKVGVPSLR LTPEGLPCDP DEERPRETLE GTTGGKGRNR MASQGVGREK 1500 GGREVKQAGQ VGGRRRSTNN GGAASKSRAR ASSSGPKNSK PKRKLQFVER ETETLVGDGR 1560 QVKAGAGRRC STRTVAGRTG QGGRAPQSGG RSKPAVRSNG RRSQTSTRRP GPKQRNPNEL 1620 MLPVSQRPSK VKLLADSQLP EQDPEEEEEE EEEESNAGGS QAGGHWEASD EGSEDGDPYD 1680 IEENPEIEDD EGREQNGSDT GEGEEEEEER MYDEQAEGDG DELDGNGEED GEDQDEENSY 1740 DAEEAGDDES GQERRDVSDY GRGEIEDEED EETGDIETED EADAKEPEER DSPSYSEED*

Sequence ? help Back to Top

Protein Sequence Length: 1800 aa Download sequence Send to blast

MMASEERMRL SPEETNFKRR MKTPVQLEAL ERVYAEDRYP VESVRAELSA QLNLSDKQLQ  60
MWFCHRRLKD RKGKDEASST PSVSRKKAKV DNSTVLQYPQ AVLASDTGDA VLLSGDHYGQ  120
QYLYEGLQHF TPEEPKARSK RSVPRELEFL GKQRSQELAV RVAVEAQLGE PLREDGPPLG  180
TEFDPLPVGA FSIKGDVLGD PRQFIGQDQS AHGDKHYDYA QEMKLKGSLP SLALGLPPPL  240
PNPRGSKRKS MAPPAPLPVQ FEPRPLCEYQ FLPEQPVRLE ESQFYERATK QLNLFPGPER  300
SYEILAASRM EEARLQKEVE AQEKRIQKEL EKQEALRRKR DEQMRKEQEK MEREIRKEEE  360
RVMRERMKEQ ERIERENKKE AERQEKLQQK ELKRMEKLRH KEEARKEKEA ARIKAANERA  420
LAKRLAKDVT DLIDDEQLEL MEAATAAAAL NHDYLDGDGT LDASQILLRP FPPATVKMKP  480
LLSVYPWTDS DQNVGNLLMV WRFLTTFADV VGLWPFTIDE LVQGFHDYDS RLLADIHVAL  540
VKTMVKDIVD AAQAVAGGTV GQRDAIAMAA GGHPQLVESA YAWGFDIREW GKHVNGLTWP  600
EILRQFALAA GFGPKWKKQN MTSNVSKDEQ EKDKREDTVA NLRSGAAAAN AVALMQGKGI  660
GTSRRSQFCL TPGTVKFAAF HVLSLEGDKG LSIGEVVKRI KTLGLRDLSS SKTPEASVSA  720
VLSRDSNLFE RIAPSTYTVR PAFRKDPEDA DAILSTARER IRQYQIGLLD GKGVEKEGDD  780
ADTEYGSEGQ DVEDMEDMEK EEDEEDEEPG SSKRVKANGR GQRLLTQDGT SGDSESPVAD  840
GNGAVEIEAF EDIVKEDEEE DGGKEGLQGA KPCEQPEDET ELDESQEVEL WVQGLVEGEY  900
ADLSVEERLN ALVALVTTVN QGNAIRVALE ERLEAATALK RQMWAEMQLE KRRLKEEQNS  960
RAHVVPAGPR LEGESPEMLA ENPGAGASTV DPKSVGTIDV NLSNHHVRTQ GDSFAVNGRP  1020
CNGMTSLQSS HEAGSSMAHL SEKSRAQTKV DIGLRAEELY VFRSLPLGCD RRHNRYWQFV  1080
TGNGGQDPGC GRLFFESNSD GCWSVIDNEE DLDALMTSLD PRGAREAALA AILHRLEGTL  1140
RRAMQSKALA DAQQLSRLSS TVTCPFPYGE RGSGWKGLEG SPVSGISGLE SDPVETNAAI  1200
SVELGRTGSE KRRALERYMD VEKWFWSECF NGETATKATK SGLKRDTDLL VSCNVCHDCY  1260
WPQDKHCRCC HATFESSSPR AHSRFLDHNY ECEEKKRRGD PNWKLNGSLA SMPSRLQLLK  1320
AQLLTIELAI PAEALNERWT ERQRKLWAGS LKSASGPSEL LQVLMTLESV VERDWLASTY  1380
ETMEEILEVM GSASCAEGQG AVPHWVPLTT AAVAFRISLF DDALAYDEEA KKDREKQEEE  1440
DEIKEKSQAM HTKVGVPSLR LTPEGLPCDP DEERPRETLE GTTGGKGRNR MASQGVGREK  1500
GGREVKQAGQ VGGRRRSTNN GGAASKSRAR ASSSGPKNSK PKRKLQFVER ETETLVGDGR  1560
QVKAGAGRRC STRTVAGRTG QGGRAPQSGG RSKPAVRSNG RRSQTSTRRP GPKQRNPNEL  1620
MLPVSQRPSK VKLLADSQLP EQDPEEEEEE EEEESNAGGS QAGGHWEASD EGSEDGDPYD  1680
IEENPEIEDD EGREQNGSDT GEGEEEEEER MYDEQAEGDG DELDGNGEED GEDQDEENSY  1740
DAEEAGDDES GQERRDVSDY GRGEIEDEED EETGDIETED EADAKEPEER DSPSYSEED*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024398539.1	0.0	homeobox-DDT domain protein RLT2-like isoform X2
TrEMBL	A0A2K1J8P1	0.0	A0A2K1J8P1_PHYPA; Uncharacterized protein
STRING	PP1S15_37V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	1e-121	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sphfalx0146s0044.1.p