PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0145s0016.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C3H

Protein Properties

Length: 399aa MW: 42626.4 Da PI: 8.4777

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0145s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.3	1.5e-09	5	26	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e Cr+f+r G C++G rCkF+H Sphfalx0145s0016.1.p 5 QEVCRDFQR-GNCRFGTRCKFSH 26 799****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.8E-8	2	28	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	17.084	2	29	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	4	30	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-6	5	26	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.0E-7	6	27	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MSRRQEVCRD FQRGNCRFGT RCKFSHQLPQ NQQPQSNAFD SGRRHSPQQQ GGFGDRGRNS 60 FEALSNANSS QKPQQQVPLK DHKCNDPRVC KEQIKDDMAH EHPLFWRLTS YGHWKFLPND 120 ISGDVSPEEL RALAYDSAKQ GLSLHQIAQK EASMVAAKNA EFESLLRNPY QSPVAQRAGF 180 TPVAFPSSPF ASTPQPGGNM VFGVPSTPNV GFGQPISPFG VAAGASPQSI GGFGSSFNTK 240 GPIVPAPNTS TFLGNAYPQP DQNVFGTQLP PSQNFVGMQS FNGFGNTNSG IAGGFGIGGT 300 GSAGPVPISP FNSPVPNMAP TLGFGNITQS PPPLGASLST STTPLPASPF TSQVLSGTSP 360 FTKSSLEGQL PVADDIWLKE TWKLGEIPEQ EPPSYVRY*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MSRRQEVCRD FQRGNCRFGT RCKFSHQLPQ NQQPQSNAFD SGRRHSPQQQ GGFGDRGRNS  60
FEALSNANSS QKPQQQVPLK DHKCNDPRVC KEQIKDDMAH EHPLFWRLTS YGHWKFLPND  120
ISGDVSPEEL RALAYDSAKQ GLSLHQIAQK EASMVAAKNA EFESLLRNPY QSPVAQRAGF  180
TPVAFPSSPF ASTPQPGGNM VFGVPSTPNV GFGQPISPFG VAAGASPQSI GGFGSSFNTK  240
GPIVPAPNTS TFLGNAYPQP DQNVFGTQLP PSQNFVGMQS FNGFGNTNSG IAGGFGIGGT  300
GSAGPVPISP FNSPVPNMAP TLGFGNITQS PPPLGASLST STTPLPASPF TSQVLSGTSP  360
FTKSSLEGQL PVADDIWLKE TWKLGEIPEQ EPPSYVRY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	1e-43	C3H family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0145s0016.1.p