PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0143s0032.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | MYB_related | ||||||||
Protein Properties | Length: 151aa MW: 17184.7 Da PI: 10.4052 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.4 | 6.8e-13 | 74 | 115 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE +++ +a k +G++ +++Ia+ +g +R+ q++ + qky Sphfalx0143s0032.1.p 74 WTNEERQRFRKALKTFGTD-FAAIAKFVG-TRSSTQVRTHAQKY 115 *******************.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.755 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-7 | 67 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-11 | 70 | 118 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.94E-12 | 71 | 119 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-8 | 72 | 118 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.4E-12 | 73 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-9 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MEKCGMILMP TSARSTKTLT PEHYLQNMDT LGLQQLEHLE KELEQAKQKI MVLKAQDHLE 60 TTSPDNKVSE SRYWTNEERQ RFRKALKTFG TDFAAIAKFV GTRSSTQVRT HAQKYYAKLI 120 RDYKRSGKAG SATIKGREEM KGAPNRLTAM * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380186.1 | 2e-80 | myb-like protein I | ||||
TrEMBL | A0A2K1KBB1 | 4e-79 | A0A2K1KBB1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S87_134V6.1 | 6e-80 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 3e-11 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0143s0032.1.p |