PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0141s0014.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 656aa MW: 67793.4 Da PI: 6.7739

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0141s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	5.1e-39	181	240	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k +cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnvPvG+grrknk++ Sphfalx0141s0014.1.p 181 PDKPAPCPRCESLDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTLRNVPVGAGRRKNKHV 240 78999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	178	238	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.8E-32	183	239	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.528	185	239	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	187	223	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MSKLRKWLMK EERVGSPISS VDPAIKLFGR TIAVTGGSTD AENGEVISDS PSPRQKAPLA 60 CSQETSDAKK AWDAEEEAGD AKETGEEMVP QTEDNCTSHG TGTADGLGSS LGSNNRPAEA 120 EEEKSMKSGK RDSDSTVTGA TGTETVAVGA EVSEGRSMEH KKEEEEGGQE IGSQGKTLKK 180 PDKPAPCPRC ESLDTKFCYY NNYNINQPRH FCKSCQRYWT AGGTLRNVPV GAGRRKNKHV 240 GLQARHGAVA DGSGMSMVRP DSRETAQQLL PPPGSKISPS KHPQIPGQCP TLPALNASSG 300 GSTITSFCQD SVLSDGAAFS RHVTGTISPQ PYPCSNPYVA SGAGGEINLM GGFQVSSKSC 360 SNPAVNGSQN GVSAIGEVPS EVEKKEVVDE CASSLSEPVS TATQEASANN GGPMPLHPNL 420 QPEVGGLYRP MSMGDAGVLA AGGTGAPFGF YNGAWPYGFN VGWSGAVPAV SPGVVGSGQL 480 LPGNGMATWN PPPSGVWPGA GVLPWGSPVP GMPGSPWVVP PGWGGGWTVP LPWATAAAAA 540 AAAQAAASTA GSTASGSAPP SSKLPGSTTP ALGKHPRERP EGRRVDGALW APKTLRIDDP 600 KEAARSSVWN ALGMPSPPES VLSGSMFKAF QPKTETKLRT ESQQQRVKQS TGQQT*

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MSKLRKWLMK EERVGSPISS VDPAIKLFGR TIAVTGGSTD AENGEVISDS PSPRQKAPLA  60
CSQETSDAKK AWDAEEEAGD AKETGEEMVP QTEDNCTSHG TGTADGLGSS LGSNNRPAEA  120
EEEKSMKSGK RDSDSTVTGA TGTETVAVGA EVSEGRSMEH KKEEEEGGQE IGSQGKTLKK  180
PDKPAPCPRC ESLDTKFCYY NNYNINQPRH FCKSCQRYWT AGGTLRNVPV GAGRRKNKHV  240
GLQARHGAVA DGSGMSMVRP DSRETAQQLL PPPGSKISPS KHPQIPGQCP TLPALNASSG  300
GSTITSFCQD SVLSDGAAFS RHVTGTISPQ PYPCSNPYVA SGAGGEINLM GGFQVSSKSC  360
SNPAVNGSQN GVSAIGEVPS EVEKKEVVDE CASSLSEPVS TATQEASANN GGPMPLHPNL  420
QPEVGGLYRP MSMGDAGVLA AGGTGAPFGF YNGAWPYGFN VGWSGAVPAV SPGVVGSGQL  480
LPGNGMATWN PPPSGVWPGA GVLPWGSPVP GMPGSPWVVP PGWGGGWTVP LPWATAAAAA  540
AAAQAAASTA GSTASGSAPP SSKLPGSTTP ALGKHPRERP EGRRVDGALW APKTLRIDDP  600
KEAARSSVWN ALGMPSPPES VLSGSMFKAF QPKTETKLRT ESQQQRVKQS TGQQT*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-36	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Sphfalx0141s0014.1.p