PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0140s0043.3.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 297aa MW: 32269 Da PI: 8.9128

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0140s0043.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.5	1.7e-34	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av qLGGs+kAtPkt++++m+vkgLtl+h+kSHLQkYRl Sphfalx0140s0043.3.p 47 KPRLRWTPELHERFVDAVMQLGGSDKATPKTVMRVMGVKGLTLYHLKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.282	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-33	45	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.0E-16	47	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.8E-24	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-9	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	2.1E-24	147	194	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MYQMKKYTSP GLIPHRSQTS SSNQQDRSSL YSGTLSGDGG VTSADPKPRL RWTPELHERF 60 VDAVMQLGGS DKATPKTVMR VMGVKGLTLY HLKSHLQKYR LGKQFHREGS VPEAKDVLHG 120 SSDGQVVNNA ASQTMTTPKS QNSQESFQIT EAIRMQMEAQ RRLQEQLEIQ RNLQLRIEAQ 180 GKYLQSILEK AKETLANHTG VAPGLEAAHA ELTELASKVN TEPLDPSFSS LALPNLSAHE 240 DHAQGGSLPR QSSRISDTSS QKSYLTNLTV KPEDSGGASG SCEHQASTGI VTTSSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-22	47	100	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-22	47	100	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-22	47	100	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-22	47	100	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373739.1	1e-133	protein PHR1-LIKE 3-like
Swissprot	Q8LAJ7	1e-69	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A2K1KNR0	1e-132	A0A2K1KNR0_PHYPA; Uncharacterized protein
STRING	PP1S13_270V6.1	1e-133	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-50	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0140s0043.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]