PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0140s0042.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | G2-like | ||||||||
Protein Properties | Length: 490aa MW: 52663.8 Da PI: 7.4092 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.3e-33 | 50 | 104 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk++l++m+vkgLtl+h+kSHLQk+Rl Sphfalx0140s0042.1.p 50 KPRLRWTPELHERFVDAVTQLGGADKATPKSVLRVMGVKGLTLYHLKSHLQKFRL 104 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.345 | 47 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-32 | 48 | 105 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-24 | 50 | 105 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.51E-16 | 50 | 105 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-8 | 52 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.4E-22 | 153 | 200 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MYQVKKYAAS PPGAGGLMSS QTTTPSPHLA AAERASVLYG SDGMNSADPK PRLRWTPELH 60 ERFVDAVTQL GGADKATPKS VLRVMGVKGL TLYHLKSHLQ KFRLGKQLHK DTTNVHDADK 120 DGSHHGSSDM QRTSTPASDS VAPLQPKTPQ DSIQITEAIR LQMEVQHRLQ QQLEVQRNLQ 180 LRIEAQGKYL QSILEKAKET LAGHTSSSPG LEAAHAELTE LASKVSNSDP LGGGHSFSYT 240 SLPGITTTHH EFLQQFGADY NHHHHHPRQA RSGGTSSPPP QYQQQKQQQF PHRQSRVSNS 300 SSQKSSYLTN LTANPEDDSA GGSASGGVEQ QQQHPTATME GIGDKSSPGG RRSIVRQSNE 360 GNSSHVFMNL ESSGEASAVI VELPTTARRG GGAIQSLEEE SSAGGDGSPH TTSSAASSLQ 420 GITTTTTYDH GDMRPNTTTV HQRSHQSSLA RTHVKVEDSA GSLDLNHGTP GLAMQRASDL 480 DLNTYSWER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-21 | 50 | 103 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-21 | 50 | 103 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-21 | 50 | 103 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-21 | 50 | 103 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-21 | 50 | 103 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-21 | 50 | 103 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-21 | 50 | 103 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-21 | 50 | 103 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-21 | 50 | 103 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-21 | 50 | 103 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-21 | 50 | 103 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-21 | 50 | 103 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00378 | DAP | Transfer from AT3G24120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 4e-61 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0140s0042.1.p |